CF835159

Overview
NameCF835159
Unique NameCF835159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7759 contig Csv1_Contig7759:307..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.037e-22
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +LLDVKPWDDETDM +LE+ VRS++M+GL+WGASKL  VGYGIKKL I L + D  VS D L E+    +   +YVQS D+ AFNKI
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVEDLKVSTDELEEK---IKDFEDYVQSVDVAAFNKI 216          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.047e-21
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            V LDVKPWDDET M +LE+AVRS+QM+GL+WG SKL PVG+G+ K QI L + DD VS++ L EE    E   +YVQS DI A +K+
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEE---LEGFEDYVQSTDIAAMSKL 214          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            ++LDVKPWDDETD+K +E  +R +  +GLLWGASK  PV +GI+KL I   + DD VS+D L EE    E + ++VQS DI AFNKI
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEE---IEKLEDFVQSVDIAAFNKI 256          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WG+SKL PVGYGI+KLQI   +  +      L   H +E    E+VQS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV--ECRWGRPLERSHQVE----EHVQSVDIAAFNKI 277          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            V LDVKPWDDETD+ +L   V++++MEGL WGA +  PVG+GIKKLQI L + D LVS+D L  +  +EE   ++VQS DI A  K+
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVSLDDL--QAAVEED-EDHVQSTDIAAMQKL 213          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 6.816e-17
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            V LDVKPWDDET+++++   V++++MEGL WGA +  P+G+GIKKLQI   + DD VS+D L  +  +EE   ++VQS DI A  K+
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL--QQSIEED-EDHVQSTDIAAMQKL 206          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  202 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 462
            +L DVKPWDD  D++ L   + +V+ +GLLWG  KL PV +G+KKLQ ++ I DD V  D L E   L     + VQS DIVA+NKI
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVLSDDLEE---LIMSFEDEVQSMDIVAWNKI 222          
BLAST of CF835159 vs. ExPASy Swiss-Prot
Match: EF1B_PIG (Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 42/83 (50.60%), Postives = 48/83 (57.83%), Query Frame = -1
Query:  202 VKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 450
            VKPWDDE  M KLEE V S+Q +GL+     L PVGYGIK         DD V  D L E+    E   +YVQS D+ AFNKI
Sbjct:  145 VKPWDDEXXMAKLEEXVXSIQADGLVXXXXXLVPVGYGIKXXXXXXXXXDDKVGTDMLEEQITAFE---DYVQSMDVAAFNKI 224          
The following BLAST results are available for this feature:
BLAST of CF835159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_DICDI7.037e-2260.92Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1B_SCHPO2.047e-2158.62Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1D_DROME4.561e-2155.17Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1D_SHEEP2.503e-1958.62Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1B_CANAL2.342e-1754.02Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST6.816e-1749.43Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR2.864e-1549.4325 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]
EF1B_PIG2.680e-1350.60Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835159 ID=CF835159; Name=CF835159; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTCGCCACAGTAAAAAAACTCCAAAGAGAGAGCCTC
TTTAGAAGAACAAATCCATAATGGAACACACAAGACTCCTGAAACAAAAA
TAAATATTTTAAAATAAATATCACTTTGCTATGATCATTATCCAAGACAA
AATCCCCGGAAGCCTCTCTAGCACCCACTTTGCCAAAGGATCCACAAATT
ATATTTTGTTGAAGGCTACAATATCACAGCTCTGGACATATTCATTAATT
GGTTCTTCCAGCAGGTGTTCCTCAATGAGGGTGTCAACAGACACCAAGTC
ATCCACAATTGTAAGCATTATTTGCAATTTCTTGATACCATATCCAACAG
GTGCAAGTTTGCTGGCTCCCCAGAGTAATCCTTCCATCTGAACACTTCTT
ACTGCTTCCTCAAGCTTCTTCATGTCAGTCTCATCATCCCAAGGCTTCAC
ATCCAATAGAACTGATGACTTGCCAGATTCTTTCTTTTTGGCTGATGCTT
TGACGGAAGCTGCGCGTGCCTCGGCAGCCTTCTTTTCCTCTTCTGTCTCC
TCACCAAATAGATCCACATCATCGTCGTCATCATCAGGAGCTGCTGCCTT
TGAGTCAGCTACCGGGGGAGTAGCAACAGGAGCAGATCCCTCTACAGTGA
CACCAGAGCCTTCACCAGTAACGCCAGAGATCCTTAAAAGTGCATCAATA
TGCTTGTACCACCGAGACACATTGACATATTCAGATGATGGTGCTTTTGA
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