CF835162

Overview
NameCF835162
Unique NameCF835162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835162 vs. ExPASy Swiss-Prot
Match: 2A5B_RABIT (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform OS=Oryctolagus cuniculus GN=PPP2R5B PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.580e-80
Identity = 136/248 (54.84%), Postives = 185/248 (74.60%), Query Frame = 2
Query:    2 EDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIP 745
            E++EP  +P+W HLQ+VY+  LRF+        VAK+YVD  F++ LL+LFDSEDPRER+ LKT+LHR+YGKF+  R +IR+   +I  RF++E E  NG+AELLEI GSII+GFALPLK EHK FL R LIPLH  KS+ ++H QL YCVVQF++KD  L  + I+GLLKYWP T +QKE+MF+ E+EE+L++   ++F KI  PLF+++  C++S H+QVAERA   WNNE+IL+L+  N   ++P
Sbjct:  152 EEDEPNLEPSWPHLQLVYEFFLRFLESPDFQPSVAKRYVDQKFVLMLLELFDSEDPREREYLKTILHRVYGKFLGLRAYIRKQCNHIFLRFIYEFEHFNGVAELLEILGSIINGFALPLKTEHKQFLVRVLIPLHSVKSLSVFHAQLAYCVVQFLEKDATLTEHVIRGLLKYWPKTCTQKEVMFLGEVEEILDVIEPSQFVKIQEPLFKQVARCVSSPHFQVAERALYFWNNEYILSLIEDNCHTVLP 399          
BLAST of CF835162 vs. ExPASy Swiss-Prot
Match: 2AD1_SCHPO (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta 1 isoform OS=Schizosaccharomyces pombe GN=par1 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.850e-77
Identity = 134/248 (54.03%), Postives = 185/248 (74.60%), Query Frame = 2
Query:    2 EDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIP 745
            E++EP  + AW HL +VYD  LRF    SL+  VAK Y++  FI +LL LFDSEDPRERD LKT LHRIYGKF++ R FIR+++ N+  +FV+E E+ NGIAELLEI GSII+GFALPLKEEHKIFL R LIPLHK KS+ +Y+ Q+ Y +VQF++KD  +    + GLL+YWP  NS KE++F++E+E+++E+   +EF KI VPLF ++   ++S ++QVAERA   +NN++ ++LV  N  +I+P
Sbjct:  200 EEDEPALEVAWPHLHLVYDFFLRFFESPSLNTSVAKVYINQKFIRKLLVLFDSEDPRERDFLKTTLHRIYGKFLSLRAFIRRSINNLFLQFVYENEQFNGIAELLEILGSIINGFALPLKEEHKIFLSRVLIPLHKAKSLPLYYPQIAYGIVQFVEKDSSVTEEVVLGLLRYWPKVNSSKEVLFLNEIEDIIEVMEPSEFLKIQVPLFHKLATSISSQNFQVAERALYFFNNDYFVHLVEENVDIILP 447          
BLAST of CF835162 vs. ExPASy Swiss-Prot
Match: 2AD2_SCHPO (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta 2 isoform OS=Schizosaccharomyces pombe GN=par2 PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 6.385e-76
Identity = 134/247 (54.25%), Postives = 181/247 (73.28%), Query Frame = 2
Query:    5 DEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIP 745
            D+EP  +PAW HL+ VY L ++F+         AK  VD  F  RLL LFD+EDPRER+ LKT LHRIYGKF+  R +IR+++ N+  +F++E E+ +GIAELLEI GSII+GFA+PLKEEHKIFL + LIPLH+ KSV +YH QLTYC+VQFIDKDP L    + G+LKYWP  NS KEL+F++E+E++ E+   +EF  IM PLF+++   ++S H+QVAERA  LW+NE+  +LV+ N   ++P
Sbjct:  302 DDEPFLEPAWPHLEEVYLLFIKFLESPDFRASKAKSLVDRRFFNRLLALFDTEDPRERELLKTTLHRIYGKFLNLRSYIRKSMNNVFLQFIYEREKFHGIAELLEILGSIINGFAVPLKEEHKIFLSKVLIPLHQTKSVFLYHPQLTYCIVQFIDKDPSLTKAVLTGILKYWPRINSFKELLFLNEIEDIFEVLEPSEFVNIMSPLFQQLARSISSMHFQVAERALCLWSNEYFTSLVSQNVVTLLP 548          
BLAST of CF835162 vs. ExPASy Swiss-Prot
Match: PSRA_DICDI (Serine/threonine-protein phosphatase 2A regulatory subunit psrA OS=Dictyostelium discoideum GN=psrA PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.629e-73
Identity = 126/239 (52.72%), Postives = 177/239 (74.06%), Query Frame = 2
Query:    2 EDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLV 718
            E++EP+ + AW H+Q+VY++LLRF+   + +  +AK YVD  F++++LDLFDSEDPRERD LKT LHRIYGKF+  R FIR A+ N+   FV+E+ +HNGI+E+LE+ GSII+GF +PLK+EHK FL + LIPLHKPKS  +Y   L YC+ QFI+K+P LA    K +L+ WP  NSQKE++F+SE+E++L + S  +F K     FR++  C  S H+QVAERA  L++NE+I+ L+
Sbjct:  203 EEDEPILEAAWPHIQVVYEVLLRFIDSPTFNTHIAKNYVDDRFVLQMLDLFDSEDPRERDYLKTTLHRIYGKFLGLRGFIRTAIRNLFCTFVYESHQHNGISEILEVLGSIINGFLVPLKDEHKQFLIKVLIPLHKPKSYSVYCSHLGYCMSQFIEKEPSLAEPIFKSILRLWPCGNSQKEVLFLSEMEDLLGLVSDEQFAKFRNQFFRQMTKCFQSEHFQVAERALYLFSNENIVLLI 441          
The following BLAST results are available for this feature:
BLAST of CF835162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
2A5B_RABIT5.580e-8054.84Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2AD1_SCHPO9.850e-7754.03Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2AD2_SCHPO6.385e-7654.25Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
PSRA_DICDI8.629e-7352.72Serine/threonine-protein phosphatase 2A regulatory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835162 ID=CF835162; Name=CF835162; organism=Citrus sinensis; type=EST; length=747bp
TGAAGATGAAGAACCAATGTTTGATCCTGCTTGGTCACATTTGCAGATTG
TATATGATCTACTACTTCGGTTTGTCAGTTATGGTTCTCTTGATGTAAAG
GTGGCAAAGAAGTATGTAGATCATTTATTTATTGTGAGATTACTTGACCT
TTTTGATTCGGAGGACCCAAGAGAAAGAGACTGCTTGAAAACAGTTTTGC
ATAGGATATATGGGAAATTCATGGCACACAGGCAATTTATTCGACAAGCA
GTTTGCAATATCATCTATCGTTTTGTTTTTGAAACTGAAAGACATAATGG
GATTGCAGAGCTGTTGGAGATTTTTGGGAGTATTATTAGTGGGTTTGCAT
TGCCATTGAAAGAAGAGCACAAGATCTTTCTATGCAGGGCTCTGATTCCT
CTGCACAAGCCCAAATCAGTGGGTATTTATCATCAACAATTAACATATTG
TGTTGTACAGTTTATAGATAAGGACCCAAAGTTGGCTACAAATGCGATTA
AGGGACTGTTGAAGTATTGGCCGGTGACAAATAGCCAGAAAGAGTTGATG
TTTATAAGTGAGTTGGAAGAGGTTCTGGAAATGACTAGTATGGCTGAGTT
CCAAAAGATAATGGTACCACTTTTTCGGCGCATAGGATGCTGCCTTAACA
GCTCCCATTACCAGGTGGCTGAACGAGCTCACTTACTATGGAACAACGAG
CACATTCTTAATCTTGTAACCCATAACCGACAGGTGATTATTCCTCT
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