CF835163

Overview
NameCF835163
Unique NameCF835163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835163_ssr113 microsatellite CF835163_ssr113:113..128. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10947 contig Csv1_Contig10947:93..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.916e-57
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = -3
Query:  239 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 655
            LTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRC+VQVSYAIGV EPLSVFVD+Y TGKI DK+IL ++KENFDFRPGMI+INLDLKRGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  249 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVAEPLSVFVDTYKTGKIADKDILALIKENFDFRPGMIAINLDLKRGGNLRYQKTAAYGHFGRDDPDFTWETVKILK 387          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.180e-56
Identity = 111/139 (79.86%), Postives = 118/139 (84.89%), Query Frame = -3
Query:  239 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 655
            LTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  249 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.180e-56
Identity = 111/139 (79.86%), Postives = 118/139 (84.89%), Query Frame = -3
Query:  239 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 655
            LTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  249 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.628e-56
Identity = 110/139 (79.14%), Postives = 118/139 (84.89%), Query Frame = -3
Query:  239 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 655
            LTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDF+WE VK LK
Sbjct:  249 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFSWETVKVLK 387          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.432e-56
Identity = 110/138 (79.71%), Postives = 117/138 (84.78%), Query Frame = -3
Query:  242 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPL 655
            LTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L
Sbjct:  249 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL 386          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.646e-56
Identity = 109/139 (78.42%), Postives = 118/139 (84.89%), Query Frame = -3
Query:  239 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 655
            LTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRC+VQVSYAIGV EPLSVFVD++ TGKIPDK+IL ++KENFDFRPGMI+INLDLKRGGN R+ KTAA GH GRDDPDFTWE VK LK
Sbjct:  249 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVAEPLSVFVDTFKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAALGHLGRDDPDFTWETVKILK 387          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.906e-55
Identity = 108/138 (78.26%), Postives = 116/138 (84.06%), Query Frame = -3
Query:  242 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPL 655
            LTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IP K++L ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L
Sbjct:  249 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPGKDVLTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL 386          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.795e-55
Identity = 108/139 (77.70%), Postives = 117/139 (84.17%), Query Frame = -3
Query:  239 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 655
            LTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGMI+INLDL RGGN R+ KTAAYGHFGRD+ DFTWE VK LK
Sbjct:  249 LTGRKIIIDTYGGWGAHGEGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILALIKENFDFRPGMIAINLDLLRGGNFRYQKTAAYGHFGRDEADFTWETVKALK 387          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.594e-53
Identity = 102/139 (73.38%), Postives = 116/139 (83.45%), Query Frame = -3
Query:  239 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 655
            LTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKS+VASGLA+RC+VQVSY+I V EPLSVFVD+YGTG +PD EILK+++++FDFRPG+I  NLDLKRGGN R+ KTAAYGHFGRDDPDFTWE VK L+
Sbjct:  252 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSVVASGLAKRCLVQVSYSIAVAEPLSVFVDTYGTGTMPDAEILKLIRKHFDFRPGLIGKNLDLKRGGNKRYQKTAAYGHFGRDDPDFTWETVKKLE 390          
BLAST of CF835163 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.912e-47
Identity = 98/139 (70.50%), Postives = 108/139 (77.70%), Query Frame = -3
Query:  242 LTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD-FTWEIVKPL 655
            LTGRKIIIDTY            GKDPTKVDRSGAYI RQ AKSIVA+GLARR + Q+SYAIGV +PLS+ VD+YG+GKIPD EIL+ VKE FDFR GMI  +LDLKRGGN R+  TAAYGHFGRDD D FTWE V PL
Sbjct:  248 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQVAKSIVAAGLARRALFQISYAIGVAQPLSIHVDTYGSGKIPDSEILEKVKEKFDFRAGMIGKSLDLKRGGNKRYQTTAAYGHFGRDDTDVFTWEKVVPL 386          
The following BLAST results are available for this feature:
BLAST of CF835163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_ACTCH6.916e-5779.86S-adenosylmethionine synthetase 1 OS=Actinidia chi... [more]
METK3_SOLLC1.180e-5679.86S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK2_SOLTU1.180e-5679.86S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]
METK1_TOBAC2.628e-5679.14S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK1_PETHY3.432e-5679.71S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK3_CATRO7.646e-5678.42S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK2_PETHY2.906e-5578.26S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK2_TOBAC3.795e-5577.70S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]
METK_CHLRE1.594e-5373.38S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_OSTTA2.912e-4770.50S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835163 ID=CF835163; Name=CF835163; organism=Citrus sinensis; type=EST; length=657bp
TTGGTTTACCCTTAAGAGAATTTCAGAACAATTCATATTCGCCTCTCCCC
CCATTATGCCTTGGATTGAGAATCCATTAAACATATTTATTAAAAAAAAA
GGGGAAAAGAAGAAGAAAGAAAGAAAGAAAACATTCATGTAACTGAAACA
GAAGTAAAAAAGAAAAGTAGACATATATAAGCACCAATGAGAGGCCAGCA
GCTCATCCTTGATTAGTTTAAGCTTGAAGTTTCTCCCACTTGAGTGGCTT
AACAATCTCCCAAGTGAAATCAGGATCATCTCTGCCAAAGTGCCCATAAG
CGGCAGTCTTCAAGAACCTGCCGTTGCCACCCCTCTTGAGATCAAGATTA
ATAGAAATCATCCCAGGCCTAAAATCAAAATTCTCCTTCACAATCTTCAA
AATTTCCTTGTCAGGGATCTTCCCAGTCCCATAACTATCAACAAAAACTG
ACAAAGGCTCGGGCACACCAATAGCGTAAGAAACCTGAACAATGCATCTC
CTGGCAAGCCCGCTTGCCACAATACTCTTAGCAGCTTGCCTTACAATGTA
AGCACCGCTTCTATCAACCTTGGTAGGATCTTTCCCTGAGAAAGCCCCAC
CACCGTGTGCCCCCCAGCCACCATAAGTATCAATAATAATCTTCCGGCCG
GTGAGCC
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