CF835164

Overview
NameCF835164
Unique NameCF835164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835164_ssr33 microsatellite CF835164_ssr33:33..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12594 contig Csv1_Contig12594:11..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_DICDI (S-adenosylmethionine synthetase OS=Dictyostelium discoideum GN=metK PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.362e-40
Identity = 83/120 (69.17%), Postives = 95/120 (79.17%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH-GHLTKRPEEIG 546
            M ++LFTSESV EGHPDK+CDQVSDAVLDACLAQDP SKVACET TKT M M+ GEITTKANVDY+K+VR+  + IG+  +  G D   C VLV IEQQSPDIAQGVH G +   PE+IG
Sbjct:    1 MSSYLFTSESVTEGHPDKICDQVSDAVLDACLAQDPLSKVACETATKTGMVMILGEITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVHIGKV--NPEDIG 118          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK1_YEAST (S-adenosylmethionine synthetase 1 OS=Saccharomyces cerevisiae GN=SAM1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 3.084e-40
Identity = 83/117 (70.94%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            TFLFTSESV EGHPDK+CDQVSDA+LDACLA+DP SKVACET  KT M MVFGEITTKA +DY+KIVRDT + IG+  +  G D   C VLV IEQQSPDIAQGVH    K  E+IG
Sbjct:    4 TFLFTSESVGEGHPDKICDQVSDAILDACLAEDPHSKVACETAAKTGMIMVFGEITTKAQLDYQKIVRDTIKKIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGVHEE--KDLEDIG 118          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.817e-39
Identity = 76/118 (64.41%), Postives = 94/118 (79.66%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            +TFLFTSESV EGHPDK+CDQ+SDA+LDACL  DP SKVACET +KT M MVFGEITT++ +DY+K++R+T +SIG+  ++ G D   C VLV IEQQSPDIAQG+  H  K  EE+G
Sbjct:    3 QTFLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKALEELG 118          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK2_YEAST (S-adenosylmethionine synthetase 2 OS=Saccharomyces cerevisiae GN=SAM2 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 5.817e-39
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            +TFLFTSESV EGHPDK+CDQVSDA+LDACL QDP SKVACET  KT M MVFGEITTKA +DY++IVRDT + IG+  +  G D   C VLV IEQQSPDIAQG+  H  K  E++G
Sbjct:    5 KTFLFTSESVGEGHPDKICDQVSDAILDACLEQDPFSKVACETAAKTGMIMVFGEITTKARLDYQQIVRDTIKKIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKSLEDLG 120          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_ACACA (S-adenosylmethionine synthetase OS=Acanthamoeba castellanii GN=metK PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.296e-38
Identity = 74/107 (69.16%), Postives = 88/107 (82.24%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 513
            +T LFTSE V+E HPDKLCDQVSDA+LDACLA DP SKVACET +KT M MVFGEITTK++ DY+K++R+T + IGFT + +G D   C +LV IEQQSPDIAQGVH
Sbjct:    5 KTLLFTSECVSESHPDKLCDQVSDAILDACLANDPYSKVACETASKTGMVMVFGEITTKSSFDYQKVIRETVKRIGFTDSSIGFDYKTCNILVAIEQQSPDIAQGVH 111          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_LEIIN (S-adenosylmethionine synthetase OS=Leishmania infantum GN=METK PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.692e-38
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            + + LF+SE V EGHPDKLCDQVSDAVLDACLA DP SKVACE+C KT M MVFGEITTKA +DY+KIVR+T + IGF SAD GLD + C VLV IEQQSPDI QG+
Sbjct:    3 VHSILFSSEHVTEGHPDKLCDQVSDAVLDACLAGDPFSKVACESCAKTGMVMVFGEITTKAVLDYQKIVRNTIKDIGFDSADKGLDYESCNVLVAIEQQSPDICQGL 109          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.400e-38
Identity = 79/117 (67.52%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            +FLFTSESV EGHPDK+ DQVSDAVLDACLA+DP SKVACET TKT M MVFGEITTKA++DY+KI+R+  + IG+  +  G D   C VLV IEQQSPDIAQG+  H  K  EE+G
Sbjct:   13 SFLFTSESVGEGHPDKIADQVSDAVLDACLAEDPLSKVACETATKTGMIMVFGEITTKAHLDYQKIIRNAVKDIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKALEELG 127          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.433e-37
Identity = 77/117 (65.81%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            TFLFTSESV EGHPDK+ DQVSDA+LDACLA+DP SKVACET TKT M MVFGEITTKA +DY+K+VR+  + IG+  +  G D   C +LV IE+QSPDIAQG+  HL  R E +G
Sbjct:   16 TFLFTSESVGEGHPDKIADQVSDAILDACLAEDPLSKVACETATKTGMIMVFGEITTKAKLDYQKVVRNAIKDIGYDDSSKGFDYKTCNLLVAIEEQSPDIAQGL--HLDDRLENLG 130          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK2_PONAB (S-adenosylmethionine synthetase isoform type-2 OS=Pongo abelii GN=MAT2A PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 74/117 (63.25%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M ++ GEIT++A VDY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK2_MACFA (S-adenosylmethionine synthetase isoform type-2 OS=Macaca fascicularis GN=MAT2A PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 74/117 (63.25%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M ++ GEIT++A VDY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
The following BLAST results are available for this feature:
BLAST of CF835164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_DICDI2.362e-4069.17S-adenosylmethionine synthetase OS=Dictyostelium d... [more]
METK1_YEAST3.084e-4070.94S-adenosylmethionine synthetase 1 OS=Saccharomyces... [more]
METK_SCHPO5.817e-3964.41S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK2_YEAST5.817e-3967.80S-adenosylmethionine synthetase 2 OS=Saccharomyces... [more]
METK_ACACA1.296e-3869.16S-adenosylmethionine synthetase OS=Acanthamoeba ca... [more]
METK_LEIIN1.692e-3872.90S-adenosylmethionine synthetase OS=Leishmania infa... [more]
METK_ASCIM8.400e-3867.52S-adenosylmethionine synthetase OS=Ascobolus immer... [more]
METK_NEUCR1.433e-3765.81S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK2_PONAB4.609e-3663.25S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MACFA4.609e-3663.25S-adenosylmethionine synthetase isoform type-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835164 ID=CF835164; Name=CF835164; organism=Citrus sinensis; type=EST; length=548bp
GAAACTACAAATCCTTGCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAG
CGTATGCATATCGGCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGT
ATATCACCACCTTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAA
GCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATT
TCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTG
ACCAAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGAC
AGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACATGGACATGGTTTT
TGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTG
ATACATGCAGATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
GATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAAAGCCCTGACATTGC
TCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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