CF835164

Overview
NameCF835164
Unique NameCF835164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835164_ssr33 microsatellite CF835164_ssr33:33..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12594 contig Csv1_Contig12594:11..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK2_HUMAN (S-adenosylmethionine synthetase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.609e-36
Identity = 74/117 (63.25%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M ++ GEIT++A VDY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK2_MOUSE (S-adenosylmethionine synthetase isoform type-2 OS=Mus musculus GN=Mat2a PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 6.020e-36
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M ++ GEIT++A +DY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAIDYQKVVREAIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK2_RAT (S-adenosylmethionine synthetase isoform type-2 OS=Rattus norvegicus GN=Mat2a PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.341e-35
Identity = 72/117 (61.54%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            TFLFTSESV EGHPDK+CDQ++DAVLDA L QDPD+KVACET  KT M ++ GEIT++A +DY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQINDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAIDYQKVVREAIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_BRAHW (S-adenosylmethionine synthetase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=metK PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.287e-35
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            ++ + F+SESV EGHPDK+CD VSDAVLD CL QDP+S+VACET  KT M M+ GEITTKA +DY+KI RDT R IG+TS+D+G DAD C V+ +I +QSPDI  GV
Sbjct:    4 IKNYYFSSESVTEGHPDKICDAVSDAVLDECLKQDPNSRVACETLAKTGMIMIAGEITTKAKLDYQKIARDTVRRIGYTSSDMGFDADTCAVMESIAEQSPDIDMGV 110          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_LACBA (S-adenosylmethionine synthetase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=metK PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.902e-35
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  193 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 531
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LAQDPDS+VACET   T + +VFGEI+TKA VD +K+VR T + IG+T    G D D+C VLV I++QSPDIAQGV   L  R
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDALLAQDPDSRVACETSVTTGLVLVFGEISTKAYVDIQKVVRQTIKEIGYTDGQYGFDGDNCAVLVAIDEQSPDIAQGVDDSLETR 115          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_ANASK (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain K) GN=metK PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.692e-35
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            ++ FLFTSESV EGHPDK+ DQ+SDAVLDA L QDP  +VACET  KT   M+ GEITTKA +DY K+ R+T R IG+TS D+G DA+ C VLV ++QQSPDI QGV
Sbjct:    3 LQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV 109          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_ANADE (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=metK PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.692e-35
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            ++ FLFTSESV EGHPDK+ DQ+SDAVLDA L QDP  +VACET  KT   M+ GEITTKA +DY K+ R+T R IG+TS D+G DA+ C VLV ++QQSPDI QGV
Sbjct:    3 LQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV 109          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_ANAD2 (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=metK PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.692e-35
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  190 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 510
            ++ FLFTSESV EGHPDK+ DQ+SDAVLDA L QDP  +VACET  KT   M+ GEITTKA +DY K+ R+T R IG+TS D+G DA+ C VLV ++QQSPDI QGV
Sbjct:    3 LQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV 109          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.692e-35
Identity = 73/116 (62.93%), Postives = 89/116 (76.72%), Query Frame = 1
Query:  199 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            FLFTSESV+EGHPDK+CDQ+SDAVLDA L QDP++KVACET TKT M M+ GEIT+KA VDY+ +VR     IGFT + +G D   C VLV +EQQSP+IA GV  H+ K  E++G
Sbjct:    5 FLFTSESVSEGHPDKMCDQISDAVLDAHLKQDPNAKVACETVTKTGMVMLCGEITSKAVVDYQVLVRRVIEKIGFTDSSIGFDHKTCNVLVALEQQSPEIAAGV--HVNKDGEDVG 118          
BLAST of CF835164 vs. ExPASy Swiss-Prot
Match: METK_DROME (S-adenosylmethionine synthetase OS=Drosophila melanogaster GN=M(2)21AB PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.303e-34
Identity = 70/117 (59.83%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  196 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMDMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 546
            TFLFTSESV EGHPDK+CDQ+SDA+LDA L QDP++KVACET  KT M ++ GEIT+KA VDY+K+VR+T + IG+  +  G D   C VL+ ++QQSP+IA GV  H+ +  EEIG
Sbjct:   28 TFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQHIGYDDSSKGFDFKTCNVLLALDQQSPEIAAGV--HVNRAEEEIG 142          
The following BLAST results are available for this feature:
BLAST of CF835164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_HUMAN4.609e-3663.25S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MOUSE6.020e-3662.39S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_RAT1.341e-3561.54S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK_BRAHW2.287e-3564.49S-adenosylmethionine synthetase OS=Brachyspira hyo... [more]
METK_LACBA3.902e-3562.83S-adenosylmethionine synthetase OS=Lactobacillus b... [more]
METK_ANASK8.692e-3564.49S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ANADE8.692e-3564.49S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ANAD28.692e-3564.49S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK1_CAEEL8.692e-3562.93Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK_DROME3.303e-3459.83S-adenosylmethionine synthetase OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835164 ID=CF835164; Name=CF835164; organism=Citrus sinensis; type=EST; length=548bp
GAAACTACAAATCCTTGCTGCCGTTTTACCTCCTCTCTCTCTTCTCTCAG
CGTATGCATATCGGCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGT
ATATCACCACCTTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAA
GCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATT
TCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGGACAAGCTGTGTG
ACCAAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGAC
AGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACATGGACATGGTTTT
TGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTG
ATACATGCAGATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
GATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAAAGCCCTGACATTGC
TCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGGAGATTGGTGC
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