CF835168

Overview
NameCF835168
Unique NameCF835168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835168 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.533e-29
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   28 LDSTSGLYYDCSAHFLWVGERTKHLDGAHVEFLKGVANPLGIKVSDKMDPNELVNLIDILNPHNKPGRITIITTMGAENMRVKLPHLIRACRRSGQIVTWVSDPMHGNTVQAPCGLKTPPFD 393
            +DS +G  YD S H +W+GERT+ LD AH+EF   + NP+GIK+       E +  I+ L+P  +PGR+T I  MGA+ +R KLP L+     SG  V W++DPMHGNT +A  G KT  FD
Sbjct:  251 VDSRTGQLYDVSGHMVWIGERTRQLDHAHIEFASRIRNPIGIKLGPSTTAEEALQYIERLDPEREPGRLTFIVRMGADKIRDKLPELVEKVTASGATVAWITDPMHGNTYEAASGHKTRRFD 372          
BLAST of CF835168 vs. ExPASy Swiss-Prot
Match: PHZC_PSEFL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas fluorescens GN=phzC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.656e-26
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   61 SAHFLWVGERTKHLDGAHVEFLKGVANPLGIKVSDKMDPNELVNLIDILNPHNKPGRITIITTMGAENMRVKLPHLIRACRRSGQIVTWVSDPMHGNTVQAPCGLKT 381
            S H+ W+GERT+ L GAHV  L  V NP+  KV   +  ++L++L + L+P  +PGR+T+I  MGA  +  +LP L+ A RR+G  + W+SDPMHGNT+ APCG KT
Sbjct:  210 STHWPWIGERTRQLTGAHVALLSEVLNPVACKVGPDITQDQLLSLCERLDPRREPGRLTLIARMGAHKVADRLPPLVEAVRRAGHKIIWLSDPMHGNTIVAPCGNKT 316          
BLAST of CF835168 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   49 YYDCSAHFLWVGERTKHLDGAHVEFLKGVANPLGIKVSDKMDPNELVNLIDILNPHNKPGRITIITTMGAENMRVKLPHLIRACRRS--GQIVTWVSDPMHGNTVQAPCGLKTPPF 390
            YY+ SAHFLW+G+RT+ +D AHVE+ +G+ANP+G+K+      ++L+ ++  LNP+ +PG++T+IT  GA+ +   LP  IR    S   + V W  DPMHGNT     G+KT  F
Sbjct:  273 YYNTSAHFLWIGDRTRQIDHAHVEYFRGIANPIGVKIGPSTPTSDLLPMLRTLNPNREPGKVTLITRYGADKVASLLPAHIRTVESSEYARTVVWQCDPMHGNTQSVSGGIKTRKF 388          
BLAST of CF835168 vs. ExPASy Swiss-Prot
Match: PHZC_PSECL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas chlororaphis GN=phzC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.279e-25
Identity = 50/107 (46.73%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   61 SAHFLWVGERTKHLDGAHVEFLKGVANPLGIKVSDKMDPNELVNLIDILNPHNKPGRITIITTMGAENMRVKLPHLIRACRRSGQIVTWVSDPMHGNTVQAPCGLKT 381
            S H+ W+GERT+ L GAHV  L  V NP+  KV   +  ++L++L + L+   +PGR+T+I  MGA+ +  +LP L+ A R++G  + W+SDPMHGNT+ APCG KT
Sbjct:  210 STHWPWIGERTRQLTGAHVTLLSEVLNPVACKVGPDITQDQLLSLCERLDAKREPGRLTLIARMGAQKVAERLPPLVEAVRQAGHKIIWLSDPMHGNTIVAPCGNKT 316          
The following BLAST results are available for this feature:
BLAST of CF835168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AROF_STRCO3.533e-2946.72Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
PHZC_PSEFL3.656e-2648.60Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]
AROF_NEUCR1.064e-2543.97Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]
PHZC_PSECL5.279e-2546.73Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835168 ID=CF835168; Name=CF835168; organism=Citrus sinensis; type=EST; length=397bp
TGCCATATGAACAATCTCTAACCCGCGCTGGATTCAACTTCTGGGCTTTA
CTATGATTGCTCTGCCCATTTTCTTTGGGTTGGAGAACGTACCAAGCACC
TGGATGGTGCGCATGTTGAGTTTTTGAAAGGTGTAGCAAATCCCCTTGGC
ATTAAGGTCAGTGATAAAATGGATCCTAATGAGCTAGTGAACCTTATTGA
CATTTTGAATCCTCATAATAAACCGGGGAGGATAACTATTATCACTACAA
TGGGTGCTGAGAACATGAGAGTGAAGCTTCCTCATCTAATTAGGGCATGC
CGCCGCTCTGGCCAAATTGTTACATGGGTCAGTGACCCTATGCATGGGAA
CACCGTCCAGGCTCCCTGCGGCCTGAAAACTCCTCCCTTCGATTCTA
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