CF835177

Overview
NameCF835177
Unique NameCF835177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:753..1286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.173e-20
Identity = 43/92 (46.74%), Postives = 70/92 (76.09%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYGLVV+ VY++G++Y+PEVLD++ ++L ++F S V  V +++LA++YPTLA+  H   N  +N++ VA  T+ SF +A+ +K ++ADPSKF
Sbjct:  184 SYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.114e-18
Identity = 43/56 (76.79%), Postives = 53/56 (94.64%), Query Frame = -1
Query:  367 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 534
            SYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+ VSMVT+L+LAISYPTLAAAPH
Sbjct:  187 SYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAAPH 242          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.213e-17
Identity = 39/92 (42.39%), Postives = 64/92 (69.57%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            +YGL V+ VY+NGSVYS  VLD++++ ++E FA+  + V A++ A+  P+ AAAPH  + A++N  A+ L T + FPQ  ++KE + +P+ F
Sbjct:  183 TYGLKVEHVYDNGSVYSASVLDITDEQILEAFAAGAANVAAVSRAVGLPSAAAAPHSILEAFRNCAALCLDTPFCFPQMQRLKEMVENPAAF 274          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.611e-17
Identity = 35/92 (38.04%), Postives = 69/92 (75.00%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            +YG+ +  VY+ G+ +  +VLD+SE+ L++ F+++++ + +L+LA+++PTL +  H  VNAYK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  182 TYGMGIAQVYDQGNTFPSDVLDISEEQLLKAFSTAITTIASLSLALNFPTLPSVIHSVVNAYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 35/92 (38.04%), Postives = 64/92 (69.57%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            ++GL V  VY+NG V+   +LD+++++LV  F S+VS + +++LAI YPTL +  H  +N YK+++AVA+A  Y +P+ + + + + +P K+
Sbjct:  182 TFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKY 273          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 35/92 (38.04%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            +YG+ +  VY+ G+ +   VLD+SE+ L++ F+S+++ + A++LA+++PTL +  H  VN+YK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  182 TYGMGIAQVYDQGNTFPSSVLDISEEQLLKAFSSAITTIAAVSLALNFPTLPSVIHSLVNSYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16
Identity = 38/92 (41.30%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  259 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 534
            SYG+ V++VY++G +Y  +VLD++++D++EKF+  VS V AL+ A    T A+ PH+FV A+KN+VA+ + ++Y+FP    +K+++ +P  F
Sbjct:  184 SYGVDVRTVYDDGVIYDAKVLDITDEDILEKFSKGVSNVAALSRATGVITEASYPHVFVEAFKNIVALIIDSDYTFPLMKILKKWVENPEAF 275          
BLAST of CF835177 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.654e-14
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  274 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 534
            +YGL  + +Y+ G+ YSP +   SE+DL+ KF   +  + A++L I YPT+A+ PH  +NA+KN++A++  T Y+F  A+K K   A
Sbjct:  183 TYGLEPKIIYDAGACYSPSI---SEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAA 266          
The following BLAST results are available for this feature:
BLAST of CF835177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA0_CAEEL1.173e-2046.7460S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_CHERU7.114e-1876.7960S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_EIMTE1.213e-1742.3960S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_NEUCR4.611e-1738.0460S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_YEAST6.022e-1738.0460S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_PODAN6.022e-1738.0460S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_PLAF81.342e-1641.3060S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_DICDI3.654e-1440.2360S acidic ribosomal protein P0 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835177 ID=CF835177; Name=CF835177; organism=Citrus sinensis; type=EST; length=534bp
TTTTTTTATTGTCCTAAATAAAGGATTATATAAAATAAAAAGGAAACTGA
GTCCACTAAAAGCATTAAGAAAATAAAGCAAACATAACCATAAACGTCAA
AATCCTAAGTTATAGCACAAATGACAGTGCACTTAGTCGAACAAGATGAA
GCCCATATCTTCATCAGACTCCTCAGCAGGCTCTTCCTTCTTCTCTTCCT
CCAATGCAGCAGCAGCTGGGGCATCACCACCGCCAGCAACCGGGGCAGCA
GCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCCTTCACTTTGTCGGC
CTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGCAACCACATTCTTGT
ATGCATTGACGAACATGTGTGGAGCAGCTGCCAGGGTCGGGTATGAGATG
GCAAGTGCCAGAGCGGTGACCATTGATACACTTGAGGCGAACTTCTCCAC
TAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCTGTAGACGGAACCGT
TTTCATAGACAGACTGGACAACAAGACCATAAGA
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