CF835178

Overview
NameCF835178
Unique NameCF835178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:752..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.982e-24
Identity = 49/92 (53.26%), Postives = 71/92 (77.17%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            S+GLV+Q V++NGS+Y+P+VLD++E+ L ++F   V  V ++ L I YPT+A+ PH  VN YK V+AVA+ T+Y+FP A+KVK +LADPS F
Sbjct:  184 SFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.297e-23
Identity = 46/92 (50.00%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            S+GLV+Q V++NGS+Y+P+VLD++E+ L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ T+Y+FP A+KVK +LADPS F
Sbjct:  184 SFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 3.297e-23
Identity = 46/92 (50.00%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            S+GLV+Q V++NGS+Y+P+VLD++E+ L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ T+Y+FP A+KVK +LADPS F
Sbjct:  184 SFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.306e-23
Identity = 45/92 (48.91%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            S+GL++Q V++NGS+Y+P+VLD++E+ L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ T+Y+FP A+KVK +LADPS F
Sbjct:  184 SFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.624e-23
Identity = 46/92 (50.00%), Postives = 69/92 (75.00%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            S+GL++Q V++NGS+YSP+VLD++E  L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ T+Y+FP A+KVK +LADPS F
Sbjct:  184 SFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.253e-22
Identity = 45/92 (48.91%), Postives = 68/92 (73.91%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            S+GL++Q V++NGS+Y+P+VLD++E  L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ TEY+FP  +KVK +LADPS F
Sbjct:  184 SFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLTEKVKAFLADPSAF 275          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.253e-22
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGL+V  VY++GS++SP++LD+  +DL  KF   V+ + A+ L++ YPT+A+APH   N +KN++A+A  TE  F +A  +KEY+ DPSKF
Sbjct:  184 SYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.761e-22
Identity = 45/92 (48.91%), Postives = 71/92 (77.17%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            +YG+ V ++Y+ G+V+SP++LD+SE+DL+    S+ S++TA++L  +YPT+ +  H  VNAYKN+VAV+LATEY+F   ++ K +LADPS F
Sbjct:  182 TYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF 273          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.761e-22
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            SYGL +  VY++GS++SP++LD+  +DL  KF + V+ + A++L I YPT+A+APH   N +KN++A+A +TE  F QA  +KE++ DPSKF
Sbjct:  184 SYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKF 275          
BLAST of CF835178 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.385e-21
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 2
Query:    2 SYGLVVQSVYENGSVYSPQVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 277
            S+GLV+Q V++NGS+Y+P+VLD +E+ L  +F   V  V ++ L   YPT+A+ PH  +N YK V+A+++ T+Y+FP A+ VK +LADPS F
Sbjct:  184 SFGLVIQQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHSIINGYKRVLALSVETDYTFPLAENVKAFLADPSAF 275          
The following BLAST results are available for this feature:
BLAST of CF835178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA0_CHICK2.982e-2453.2660S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_HUMAN3.297e-2350.0060S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN3.297e-2350.0060S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_PIG4.306e-2348.9160S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_RAT5.624e-2350.0060S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_MOUSE1.253e-2248.9160S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_DROME1.253e-2247.8360S acidic ribosomal protein P0 OS=Drosophila mela... [more]
RLA0_SCHPO4.761e-2248.9160S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_CERCA4.761e-2247.8360S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0L_HUMAN1.385e-2147.8360S acidic ribosomal protein P0-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835178 ID=CF835178; Name=CF835178; organism=Citrus sinensis; type=EST; length=536bp
CTCTTATGGTCTTGTTGTCCAGTCTGTCTATGAAAACGGTTCCGTCTACA
GCCCACAGGTCCTTGACCTGTCTGAAGATGACCTAGTGGAGAAGTTCGCC
TCAAGTGTATCAATGGTCACCGCTCTGGCACTTGCCATCTCATACCCGAC
CCTGGCAGCTGCTCCACACATGTTCGTCAATGCATACAAGAATGTGGTTG
CTGTTGCTCTTGCAACTGAGTATTCATTCCCTCAGGCCGACAAAGTGAAG
GAGTACCTGGCGGACCCAAGCAAGTTTGCTGTTGCTGCTGCCCCGGTTGC
TGGCGGGGGTGATGCCCCAGCTGCTGCTGCAAAGGAGGAAGAGAACAAGG
AAGAGCCTGCTGAGGAGTCTGATGAAGATATGGGCTTCAGCTTGTTCGAC
TAAGTGCACTGTCATTTGTGCTATAACTTATGATTTTGACGTTTATGGTT
ATGTTTGCTTTATTTTCTTAATGCTTTTTGTAGACTCAGTTTCCTTTTTA
TTTTATATAATCCTTTATTTAGGACAATAAAAAAAA
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