CF835206

Overview
NameCF835206
Unique NameCF835206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835206_ssr356 microsatellite CF835206_ssr356:356..379. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1381..1965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RHOSH (Adenosylhomocysteinase OS=Rhodobacter sphaeroides GN=ahcY PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E W + +   Y+  V +LPK LDEKVA  HL K+G KLT +  EQA+YI V  +GP+K   YRY
Sbjct:  398 LAQIELWTKGAD--YQPGVYILPKALDEKVARLHLKKIGVKLTDVRPEQADYIGVKVEGPFKAEHYRY 463          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_STRAW (Adenosylhomocysteinase OS=Streptomyces avermitilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E + +    +Y   V VLPKHLDEKVA  HL  LG KLT L  EQA YI V  +GP+K   YRY
Sbjct:  420 LAQIELFTKPD--EYPTDVYVLPKHLDEKVARLHLDSLGVKLTTLRPEQAAYIGVEVEGPFKSDHYRY 485          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_JANMA (Adenosylhomocysteinase OS=Janthinobacterium sp. (strain Marseille) GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 37/68 (54.41%), Postives = 41/68 (60.29%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E +   +T  Y   V  LPKHLDEKVA   L KL  +LT L  EQA YI V   GPYKP  YRY
Sbjct:  414 IAQIELYA--NTKNYPVGVYTLPKHLDEKVARLQLKKLNAQLTTLTTEQANYIGVQQTGPYKPEHYRY 479          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_YEAST (Adenosylhomocysteinase OS=Saccharomyces cerevisiae GN=SAH1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = -1
Query:  388 LEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 582
            +EF K   TG +E  V VLPK LDE VA FHLG LG +LT+L K Q+EY+ +  +GP+K   YRY
Sbjct:  388 IEFQK---TGPFEVGVHVLPKILDEAVAKFHLGNLGVRLTKLSKVQSEYLGIPEEGPFKADHYRY 449          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_SCHPO (Adenosylhomocysteinase OS=Schizosaccharomyces pombe GN=SPBC8D2.18c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+  W + ++  Y   V +LPK LDE+VA  HLGKLG KLT L   Q++Y+ +  DGPYK   YRY
Sbjct:  368 LAQIALWTDNTS--YPLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPVDGPYKADHYRY 433          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_HERAR (Adenosylhomocysteinase OS=Herminiimonas arsenicoxydans GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 37/68 (54.41%), Postives = 41/68 (60.29%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E +   +T  Y   V  LPKHLDEKVA   L KL  +LT L  EQA YI V   GPYKP  YRY
Sbjct:  414 IAQIELYA--NTKNYPVGVYTLPKHLDEKVARLQLKKLNSQLTTLTDEQANYIGVQKAGPYKPEHYRY 479          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RAT (Adenosylhomocysteinase OS=Rattus norvegicus GN=Ahcy PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E W      KY   V  LPK LDE VA  HLGKL  KLT+L ++QA+Y+ +  +GP+KP  YRY
Sbjct:  367 MAQIELWTHPD--KYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 432          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_MOUSE (Adenosylhomocysteinase OS=Mus musculus GN=Ahcy PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E W      KY   V  LPK LDE VA  HLGKL  KLT+L ++QA+Y+ +  +GP+KP  YRY
Sbjct:  367 MAQIELWTHPD--KYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 432          
The following BLAST results are available for this feature:
BLAST of CF835206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SAHH_RHOSH3.578e-1150.00Adenosylhomocysteinase OS=Rhodobacter sphaeroides ... [more]
SAHH_STRAW4.674e-1152.94Adenosylhomocysteinase OS=Streptomyces avermitilis... [more]
SAHH_JANMA4.674e-1154.41Adenosylhomocysteinase OS=Janthinobacterium sp. (s... [more]
SAHH_YEAST6.104e-1153.85Adenosylhomocysteinase OS=Saccharomyces cerevisiae... [more]
SAHH_SCHPO6.104e-1148.53Adenosylhomocysteinase OS=Schizosaccharomyces pomb... [more]
SAHH_HERAR6.104e-1154.41Adenosylhomocysteinase OS=Herminiimonas arsenicoxy... [more]
SAHH_RAT7.972e-1150.00Adenosylhomocysteinase OS=Rattus norvegicus GN=Ahc... [more]
SAHH_MOUSE7.972e-1150.00Adenosylhomocysteinase OS=Mus musculus GN=Ahcy PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835206 ID=CF835206; Name=CF835206; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTCATAATGATTTTTCATTTAAATAAGAAACTGCG
TATAAAGATTTTTTTTTTTTTTATAATCATTCATCAGTAAACAATAAGGA
TAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACTGCACCAAATACAAA
ATAATCCAACACGGCCCCATCCAAAACCTTATTCAAATCCCAAATGGTCT
TCAAGCAAGGGAAACAAATCCGTTTCTTTCCTCCAACTTTCCCACCACCC
AAACACACACTACTACGAAATTTAAACCTAACATCCTACTACAGATCATC
ATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTCTTTCCCTCAAAACA
TTCACTCTTCTTCTTCTTCTTCTTCTTCTTCCACTTAGTACCTGTAGCGA
AGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTACTCAGCCTGCTC
CTTGGGGAGCCTGGTGAGCTTACCTCCAAGTTTGCCAAGGTGAAAAGCAG
CAACCTTTTCATCGAGGTGCTTGGGCAAAACGCACACCTTCTTCTCGTAC
TTGCCGGTGCTCTTCTCCTTCCAAAACTCAAGCTGGGCAAT
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