CF835206

Overview
NameCF835206
Unique NameCF835206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835206_ssr356 microsatellite CF835206_ssr356:356..379. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1381..1965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_MYCMM (Adenosylhomocysteinase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.128e-15
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W +    +Y+ +V  LPKHLDEKVA  H+  LGG+LT+L K+QAEY+ V  +GPYKP  YRY
Sbjct:  427 IAQIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGRLTKLTKDQAEYLGVDVEGPYKPDHYRY 492
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_MYCBT (Adenosylhomocysteinase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.128e-15
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W +    +Y+ +V  LPKHLDEKVA  H+  LGG LT+L KEQAEY+ V  +GPYKP  YRY
Sbjct:  430 IAQIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 495
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_MYCBP (Adenosylhomocysteinase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.128e-15
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W +    +Y+ +V  LPKHLDEKVA  H+  LGG LT+L KEQAEY+ V  +GPYKP  YRY
Sbjct:  430 IAQIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 495
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_MYCBO (Adenosylhomocysteinase OS=Mycobacterium bovis GN=ahcY PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.128e-15
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W +    +Y+ +V  LPKHLDEKVA  H+  LGG LT+L KEQAEY+ V  +GPYKP  YRY
Sbjct:  430 IAQIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 495
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_BRAJA (Adenosylhomocysteinase OS=Bradyrhizobium japonicum GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.128e-15
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E +     GKY+K+V VLPK LDEKVA  HL K+G KLT L K+QA+YI V  +GPYK   YRY
Sbjct:  406 LAQIELFANNKDGKYKKEVYVLPKTLDEKVARLHLAKIGVKLTELRKDQADYIGVKQEGPYKSDHYRY 473
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_SPHAL (Adenosylhomocysteinase OS=Sphingopyxis alaskensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E W      +Y+  V VLPKHLDEKVAA HL KLG KLT+L ++QA+YI V  +GP+KP  YRY
Sbjct:  407 LAQIELWTRSE--QYQNDVYVLPKHLDEKVAALHLEKLGVKLTKLTQKQADYIGVPVEGPFKPDHYRY 472
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_NOCFA (Adenosylhomocysteinase OS=Nocardia farcinica GN=ahcY PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W +    +Y+ +V  LPKHLDEKVA  H+  LGG LT+L K+QAEYI V  +GPYKP  YRY
Sbjct:  429 IAQIELWTKPE--EYDNEVYRLPKHLDEKVARIHVEALGGTLTKLTKDQAEYIGVDVEGPYKPEHYRY 494
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPS (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain BisB5) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E +     GKY+K+V VLPK LDEKVA  HL K+G KLT L K+QA+YI V  +GP+K   YRY
Sbjct:  404 LAQIELFANNKDGKYKKEVYVLPKSLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 471
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RHOP2 (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain HaA2) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E +     GKY+K+V VLPK LDEKVA  HL K+G KLT L K+QA+YI V  +GP+K   YRY
Sbjct:  404 LAQIELFANNKDGKYKKEVYVLPKSLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 471
[Close]
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RALME (Adenosylhomocysteinase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = -1 
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W E+ +GKY   V VLPKHLDEKVA   L KL  +LT L ++QA YI V  +GPYK   YRY
Sbjct:  405 IAQIELWAERDSGKYPVGVYVLPKHLDEKVARLQLRKLNAQLTELTEQQAAYIGVKKEGPYKADHYRY 472
The following BLAST results are available for this feature:
BLAST of CF835206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SAHH_MYCMM3.128e-1555.88Adenosylhomocysteinase OS=Mycobacterium marinum (s... [more]
SAHH_MYCBT3.128e-1557.35Adenosylhomocysteinase OS=Mycobacterium bovis (str... [more]
SAHH_MYCBP3.128e-1557.35Adenosylhomocysteinase OS=Mycobacterium bovis (str... [more]
SAHH_MYCBO3.128e-1557.35Adenosylhomocysteinase OS=Mycobacterium bovis GN=a... [more]
SAHH_BRAJA3.128e-1557.35Adenosylhomocysteinase OS=Bradyrhizobium japonicum... [more]
SAHH_SPHAL4.085e-1557.35Adenosylhomocysteinase OS=Sphingopyxis alaskensis ... [more]
SAHH_NOCFA4.085e-1557.35Adenosylhomocysteinase OS=Nocardia farcinica GN=ah... [more]
SAHH_RHOPS5.335e-1555.88Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_RHOP25.335e-1555.88Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_RALME5.335e-1557.35Adenosylhomocysteinase OS=Ralstonia metallidurans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835206 ID=CF835206; Name=CF835206; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTCATAATGATTTTTCATTTAAATAAGAAACTGCG
TATAAAGATTTTTTTTTTTTTTATAATCATTCATCAGTAAACAATAAGGA
TAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACTGCACCAAATACAAA
ATAATCCAACACGGCCCCATCCAAAACCTTATTCAAATCCCAAATGGTCT
TCAAGCAAGGGAAACAAATCCGTTTCTTTCCTCCAACTTTCCCACCACCC
AAACACACACTACTACGAAATTTAAACCTAACATCCTACTACAGATCATC
ATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTCTTTCCCTCAAAACA
TTCACTCTTCTTCTTCTTCTTCTTCTTCTTCCACTTAGTACCTGTAGCGA
AGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTACTCAGCCTGCTC
CTTGGGGAGCCTGGTGAGCTTACCTCCAAGTTTGCCAAGGTGAAAAGCAG
CAACCTTTTCATCGAGGTGCTTGGGCAAAACGCACACCTTCTTCTCGTAC
TTGCCGGTGCTCTTCTCCTTCCAAAACTCAAGCTGGGCAAT
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