CF835206

Overview
NameCF835206
Unique NameCF835206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835206_ssr356 microsatellite CF835206_ssr356:356..379. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1381..1965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_PLAF7 (Adenosylhomocysteinase OS=Plasmodium falciparum (isolate 3D7) GN=PFE1050w PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = -1
Query:  388 AQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 588
            AQL+ W+ K T KYE KV +LPKHLDEKVA +HL KL   LT L   Q +++ V+  GP+K   YRY
Sbjct:  413 AQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPT (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain TIE-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.968e-15
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E ++ +  GKYEKKV VLPK LDEKVA  HL K+G KLT L K+QA+YI V  +GP+K   YRY
Sbjct:  404 LAQIELFQNQ--GKYEKKVYVLPKSLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 469          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_PROM0 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.968e-15
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E + +    +Y K+V VLPKHLDE VA  HL K+G KLT+L KEQA+YISVS +GPYK   YRY
Sbjct:  407 LAQIELFNKSE--QYAKEVYVLPKHLDEMVARLHLDKIGAKLTKLTKEQADYISVSVEGPYKSEFYRY 472          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPA (Adenosylhomocysteinase OS=Rhodopseudomonas palustris GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E ++ +  GKYEKKV VLPK LDEKVA  HL K+G KLT L K+QA+YI V  +GP+K   YRY
Sbjct:  404 LAQIELFQNQ--GKYEKKVYVLPKTLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 469          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RALEJ (Adenosylhomocysteinase OS=Ralstonia eutropha (strain JMP134) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W+E+ +GKY   V  LPKHLDEKVA   L KL  +LT L ++QA YI V  +GPYK   YRY
Sbjct:  405 IAQIELWQERDSGKYPVGVYTLPKHLDEKVARLQLRKLNAQLTELTEQQAAYIGVKKEGPYKADHYRY 472          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RALEH (Adenosylhomocysteinase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W+E+ +GKY   V  LPKHLDEKVA   L KL  +LT L ++QA YI V  +GPYK   YRY
Sbjct:  405 IAQIELWQERDSGKYPVGVYTLPKHLDEKVARLQLRKLNAQLTELTEQQAAYIGVKKEGPYKADHYRY 472          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_MYCLE (Adenosylhomocysteinase OS=Mycobacterium leprae GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W +     Y+ +V  LPKHLDEKVA  H+  LGG+LT+L K+QAEY+ V  DGP+KP  YRY
Sbjct:  427 IAQIELWTKNDD--YDNEVYRLPKHLDEKVARVHVEALGGQLTKLTKDQAEYLGVDVDGPFKPDHYRY 492          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_MYCLB (Adenosylhomocysteinase OS=Mycobacterium leprae (strain Br4923) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            IAQ+E W +     Y+ +V  LPKHLDEKVA  H+  LGG+LT+L K+QAEY+ V  DGP+KP  YRY
Sbjct:  427 IAQIELWTKNDD--YDNEVYRLPKHLDEKVARVHVEALGGQLTKLTKDQAEYLGVDVDGPFKPDHYRY 492          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_METNO (Adenosylhomocysteinase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E W  +  GKY+++V  LPK LDEKVAA HL K+G KLT+L  +QA YI VS +GP+KP  YRY
Sbjct:  403 LAQIELWTNQ--GKYDRQVYTLPKALDEKVAALHLEKIGVKLTKLRPDQAAYIGVSENGPFKPDHYRY 468          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_CHLP8 (Adenosylhomocysteinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=ahcY PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E WK      Y+  V  LPKHLDE+VA  HLG++G KLT L KEQA+YI V  +GPYKP  YRY
Sbjct:  408 LAQIELWKNN----YDVDVYRLPKHLDEEVARLHLGQIGVKLTTLSKEQADYIGVPVEGPYKPEHYRY 471          
The following BLAST results are available for this feature:
BLAST of CF835206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SAHH_PLAF75.335e-1553.73Adenosylhomocysteinase OS=Plasmodium falciparum (i... [more]
SAHH_RHOPT6.968e-1558.82Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_PROM06.968e-1558.82Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_RHOPA9.100e-1558.82Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_RALEJ9.100e-1555.88Adenosylhomocysteinase OS=Ralstonia eutropha (stra... [more]
SAHH_RALEH9.100e-1555.88Adenosylhomocysteinase OS=Ralstonia eutropha (stra... [more]
SAHH_MYCLE9.100e-1555.88Adenosylhomocysteinase OS=Mycobacterium leprae GN=... [more]
SAHH_MYCLB9.100e-1555.88Adenosylhomocysteinase OS=Mycobacterium leprae (st... [more]
SAHH_METNO9.100e-1557.35Adenosylhomocysteinase OS=Methylobacterium nodulan... [more]
SAHH_CHLP89.100e-1557.35Adenosylhomocysteinase OS=Chlorobaculum parvum (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835206 ID=CF835206; Name=CF835206; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTCATAATGATTTTTCATTTAAATAAGAAACTGCG
TATAAAGATTTTTTTTTTTTTTATAATCATTCATCAGTAAACAATAAGGA
TAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACTGCACCAAATACAAA
ATAATCCAACACGGCCCCATCCAAAACCTTATTCAAATCCCAAATGGTCT
TCAAGCAAGGGAAACAAATCCGTTTCTTTCCTCCAACTTTCCCACCACCC
AAACACACACTACTACGAAATTTAAACCTAACATCCTACTACAGATCATC
ATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTCTTTCCCTCAAAACA
TTCACTCTTCTTCTTCTTCTTCTTCTTCTTCCACTTAGTACCTGTAGCGA
AGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTACTCAGCCTGCTC
CTTGGGGAGCCTGGTGAGCTTACCTCCAAGTTTGCCAAGGTGAAAAGCAG
CAACCTTTTCATCGAGGTGCTTGGGCAAAACGCACACCTTCTTCTCGTAC
TTGCCGGTGCTCTTCTCCTTCCAAAACTCAAGCTGGGCAAT
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