CF835206

Overview
NameCF835206
Unique NameCF835206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835206_ssr356 microsatellite CF835206_ssr356:356..379. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1381..1965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_SYNS9 (Adenosylhomocysteinase OS=Synechococcus sp. (strain CC9902) GN=ahcY PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E + + +  +Y K+V VLPKHLDE VA  HL K+G  LT L K+QA+YI+V  +GPYKP  YRY
Sbjct:  411 LAQIELFTKAN--EYGKEVYVLPKHLDEMVARLHLSKIGANLTELSKDQADYINVPVEGPYKPDHYRY 476          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_SYNPX (Adenosylhomocysteinase OS=Synechococcus sp. (strain WH8102) GN=ahcY PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E + + +  +Y K+V VLPKHLDE VA  HL ++G KLT L K+QA+YI+V  +GPYKP  YRY
Sbjct:  411 LAQIELFTKGN--EYGKEVYVLPKHLDEMVARLHLDRIGAKLTELSKDQADYINVPVEGPYKPDHYRY 476          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_PROM3 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ahcY PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E + +    KY  +V VLPKHLDE VA  HL K+G +LT L K+QA+YISV  +GPYKP  YRY
Sbjct:  411 LAQIELFSKGD--KYADQVYVLPKHLDEMVARLHLEKIGARLTELTKQQADYISVPIEGPYKPDHYRY 476          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_PLAYO (Adenosylhomocysteinase OS=Plasmodium yoelii yoelii GN=PY02893 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  388 AQLEFWKEKSTGKYEK-KVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 588
            AQLE W+ ++TGKYEK K  +LPK LDEKVA +HL KL   LT L   Q E++ VS  GP+K   YRY
Sbjct:  412 AQLELWENRNTGKYEKNKSYILPKELDEKVAFYHLKKLNATLTELDDNQCEFLGVSKTGPFKSEAYRY 479          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_ZYMMO (Adenosylhomocysteinase OS=Zymomonas mobilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E +   +T KY+K V +LPKHLDEKVAA HL KLG  L++L ++QA+YI V  +GP+KP  YRY
Sbjct:  399 LAQIELFC--NTDKYQKDVYMLPKHLDEKVAALHLPKLGVHLSKLTQKQADYIGVPVNGPFKPDHYRY 464          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_RHOBA (Adenosylhomocysteinase OS=Rhodopirellula baltica GN=ahcY PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E ++ +   KY  +V +LPK LDE+VA  HL  +G KLT+L +EQA+YI V  +GPYKP  YRY
Sbjct:  381 LAQMELYQNRDNDKYGVQVYLLPKELDEEVARLHLEAIGVKLTKLTQEQADYIGVPVEGPYKPNHYRY 448          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_GRABC (Adenosylhomocysteinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E W+ K        V  LPKHLDEKVAA HL K+G KLT+L  +QAEYI VS  GP+K   YRY
Sbjct:  373 LAQIELWQAKPGQYLPNHVYTLPKHLDEKVAALHLAKVGAKLTKLSDKQAEYIGVSQAGPFKHDLYRY 440          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_BURP8 (Adenosylhomocysteinase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=ahcY PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E + E S  KYE KV VLPK LDEKVA  HL ++G  LT L  EQA YI V  +GP+KP  YRY
Sbjct:  408 LAQIELFVEGS--KYENKVYVLPKQLDEKVARLHLARIGANLTELTSEQAGYIGVDKNGPFKPNHYRY 473          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_AGRRK (Adenosylhomocysteinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ahcY PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E + +   G+Y+ +V VLPKHLDEKVA  HLGKLG KLT L  EQA YI V+  GP+K   YRY
Sbjct:  401 LAQIELFTKP--GQYQNQVYVLPKHLDEKVARLHLGKLGVKLTELSGEQAAYIGVTPQGPFKSDHYRY 466          
BLAST of CF835206 vs. ExPASy Swiss-Prot
Match: SAHH_CHLCH (Adenosylhomocysteinase OS=Chlorobium chlorochromatii (strain CaD3) GN=ahcY PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  388 IAQLEFWKEKSTGKYEKKVCVLPKHLDEKVAAFHLGKLGGKLTRLPKEQAEYISVSADGPYKPLRYRY 591
            +AQ+E W+++    Y   V  LPK LDE+VA  HL ++G +LTRL  EQAEYI VSADGPYKP  YRY
Sbjct:  408 LAQIELWQKE----YAVDVYRLPKALDEEVARLHLEQIGVRLTRLTPEQAEYIGVSADGPYKPEHYRY 471          
The following BLAST results are available for this feature:
BLAST of CF835206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SAHH_SYNS97.704e-1454.41Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_SYNPX7.704e-1454.41Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_PROM37.704e-1455.88Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_PLAYO7.704e-1455.88Adenosylhomocysteinase OS=Plasmodium yoelii yoelii... [more]
SAHH_ZYMMO1.006e-1355.88Adenosylhomocysteinase OS=Zymomonas mobilis GN=ahc... [more]
SAHH_RHOBA1.006e-1351.47Adenosylhomocysteinase OS=Rhodopirellula baltica G... [more]
SAHH_GRABC1.006e-1355.88Adenosylhomocysteinase OS=Granulibacter bethesdens... [more]
SAHH_BURP81.006e-1357.35Adenosylhomocysteinase OS=Burkholderia phymatum (s... [more]
SAHH_AGRRK1.006e-1357.35Adenosylhomocysteinase OS=Agrobacterium radiobacte... [more]
SAHH_CHLCH1.314e-1357.35Adenosylhomocysteinase OS=Chlorobium chlorochromat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835206 ID=CF835206; Name=CF835206; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTCATAATGATTTTTCATTTAAATAAGAAACTGCG
TATAAAGATTTTTTTTTTTTTTATAATCATTCATCAGTAAACAATAAGGA
TAACAAGATGCAGCAAAGCAAGCAAAACTTAAAACTGCACCAAATACAAA
ATAATCCAACACGGCCCCATCCAAAACCTTATTCAAATCCCAAATGGTCT
TCAAGCAAGGGAAACAAATCCGTTTCTTTCCTCCAACTTTCCCACCACCC
AAACACACACTACTACGAAATTTAAACCTAACATCCTACTACAGATCATC
ATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTCTTTCCCTCAAAACA
TTCACTCTTCTTCTTCTTCTTCTTCTTCTTCCACTTAGTACCTGTAGCGA
AGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTACTCAGCCTGCTC
CTTGGGGAGCCTGGTGAGCTTACCTCCAAGTTTGCCAAGGTGAAAAGCAG
CAACCTTTTCATCGAGGTGCTTGGGCAAAACGCACACCTTCTTCTCGTAC
TTGCCGGTGCTCTTCTCCTTCCAAAACTCAAGCTGGGCAAT
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