CF835211

Overview
NameCF835211
Unique NameCF835211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835211_ssr270 microsatellite CF835211_ssr270:270..281. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2450 contig Csv1_Contig2450:57..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 43/109 (39.45%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                  SDDDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 43/109 (39.45%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                  SDDDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_ALTAL (60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = 3
Query:   54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            +   E A +YA LIL DDG+ +TA+K+ +L+KAA + ++E  W +LFAK  E K++ DL+LNVGS                                  SD+DMGF LFD
Sbjct:    1 MSTSELATSYAALILADDGVDITADKLQSLIKAAKIEEVEPIWTTLFAKALEGKDVKDLLLNVGSGGGAAPLPEALLLRWRAADAAPAAEEKKEEEKEESDEDMGFGLFD 110          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.897e-12
Identity = 42/109 (38.53%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                  S+DDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSAAAAPAEEKKVEAKKEESEESEDDMGFGLFD 114          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.897e-12
Identity = 42/109 (38.53%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                  S+DDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGAAPSTAAAPAEEKKVEAKKEESEESEDDMGFGLFD 114          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_OSCBR (60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 41/107 (38.32%), Postives = 53/107 (49.53%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNV--GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC YA LIL DD +A+T +KIA L+KAAN++ E +WP LFAK  E  ++ +LI +V  G+                                  SDDDMGF L D
Sbjct:    6 ELACVYAALILQDDEVAITGDKIATLLKAANIEFEPFWPGLFAKALEGVDVKNLITSVSSGASAGPAQAAAAAPAGGAPAAAAPAESKEGRRSQGESDDDMGFGLLD 112          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_CHICK (60S acidic ribosomal protein P1 OS=Gallus gallus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 42/109 (38.53%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNV----GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     ++  LI NV    G+                                  SDDDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANIDIGSLICNVGAGGGAPAAAAPAGGAAPAGGGAAPAEEKKEEEKKEESEESDDDMGFGLFD 114          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA3_SCHPO (60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe GN=rpa3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 40/110 (36.36%), Postives = 57/110 (51.82%), Query Frame = 3
Query:   54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            + A E A +Y+ LIL D+GI +T++K+ +L KAANV +E  W ++FAK  E K+L +L+LN+GS                                   SD+DMGF LFD
Sbjct:    1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_DICDI (60S acidic ribosomal protein P1 OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ L+L DDGI +TA+KI  L++AAN+ + S+WP L+A+   K N+ +L+LN G S                                  SDDDMG  LFD
Sbjct:    8 ELACIYSGLLLQDDGIEITADKIKTLLEAANITVASHWPGLYARSLAKVNIPELLLNAGSSGAAGAAPVAAATSAAAPAAAAKKETKKEEVKKEESDDDMGMGLFD 113          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_ARTSA (60S acidic ribosomal protein P1 OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 38/105 (36.19%), Postives = 48/105 (45.71%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC YA LIL DD + +T EK+  +++AA V +E YWP LF K  E  +L  +I NVGS                                   D+DMGF LFD
Sbjct:    6 ELACVYAALILLDDDVDITTEKVNTILRAAGVSVEPYWPGLFTKALEGLDLKSMITNVGSGVGAAPAAGGAAAATEAPAAKEEKKEEKKEESEEEDEDMGFGLFD 110          
The following BLAST results are available for this feature:
BLAST of CF835211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_HUMAN6.521e-1339.4560S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
RLA1_BOVIN6.521e-1339.4560S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]
RLA1_ALTAL1.112e-1237.2760S acidic ribosomal protein P1 OS=Alternaria alte... [more]
RLA1_RAT1.897e-1238.5360S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_MOUSE1.897e-1238.5360S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_OSCBR3.237e-1238.3260S acidic ribosomal protein P1 OS=Oscheius breves... [more]
RLA1_CHICK3.237e-1238.5360S acidic ribosomal protein P1 OS=Gallus gallus G... [more]
RLA3_SCHPO5.521e-1236.3660S acidic ribosomal protein P1-alpha 3 OS=Schizos... [more]
RLA1_DICDI5.521e-1236.7960S acidic ribosomal protein P1 OS=Dictyostelium d... [more]
RLA1_ARTSA5.521e-1236.1960S acidic ribosomal protein P1 OS=Artemia salina ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835211 ID=CF835211; Name=CF835211; organism=Citrus sinensis; type=EST; length=594bp
CACAAGCCAACCCCTTCCTCTCTTAGTGTGCGATTTTAGAATTATCAATT
GCACTAATGGCCGGAGAGCAAGCTTGCACCTACGCCACTTTGATTCTCCA
CGACGATGGAATCGCAGTCACTGCGGAGAAGATCGCGGCTTTGGTTAAGG
CAGCGAATGTGCAAATAGAGTCTTACTGGCCAAGCCTTTTTGCGAAGTTG
GCTGAAAAGAAAAACTTGGATGATCTCATCTTGAATGTTGGCTCCGGTGG
CGGTGCTGCCGCACCCGTTGCCGCCGCCGCCCCTGCTGGTGGTGCCGCAG
CCGCCGCCCCTGCCGCTGAGGAGAAAAAGGAAGAACCAAAGGAAGAAAGT
GATGATGATATGGGATTCAGTTTGTTTGATTAAACACCGCATTCAGTTGA
GTCAGAATTTGTTCTCTTCTTTTTTTTTTCCTGTTTTTGTTTTATTGGAA
TGTAGGACGCAGCTGAGTGGTATAGCTCAGTTTTTGTTTTTGTTTTAGTT
CTATTTCTCGCGGTGTACTTCGACAGTAAGTTTCTAATTACAAAATGAAT
ATTATCATTCTCTATGCTTATTTACTTCAAAAAAAAAAAAAAAA
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