CF835211

Overview
NameCF835211
Unique NameCF835211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835211_ssr270 microsatellite CF835211_ssr270:270..281. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2450 contig Csv1_Contig2450:57..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_POLPE (60S acidic ribosomal protein P1 OS=Polyorchis penicillatus PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.417e-12
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245
            E AC Y+ LILHDD  A+TAEK+  ++ AANV +E YWP LFA   E KN+ DLI NVGS
Sbjct:    8 ELACVYSALILHDD--AITAEKMNKIISAANVNVEPYWPGLFA--LEGKNIGDLICNVGS 63          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_ASPFU (60S acidic ribosomal protein P1 OS=Aspergillus fumigatus GN=AFUA_1G06830 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 3
Query:   54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            +   E AC+YA LIL DDG+ +TA+KI  L+ AA V  +E  W SLFAK  E K++ DL+ NVGS                                   SD+DMGF LFD
Sbjct:    1 MSTAELACSYAALILADDGVEITADKIQTLLGAAKVADVEPIWTSLFAKALEGKDIKDLLTNVGSGGAAAPAAVGGAAAGAAAPAEAAAAEEKKEEEKEESDEDMGFGLFD 111          
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_PIG (60S acidic ribosomal protein P1 OS=Sus scrofa GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 40/109 (36.70%), Postives = 48/109 (44.04%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + V  +KI AL+KAA V +E +WP  FAK     N+  LI NVG+                                      SDDDMGF  FD
Sbjct:    6 ELACIYSALILHDDEVTVPEDKINALIKAAGVNVEPFWPGFFAKALANVNIGSLICNVGAGGPPPPAGAAPPGGPAPPPPAAPAEEKKVEAKKEEFEESDDDMGFGFFD 114          
The following BLAST results are available for this feature:
BLAST of CF835211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_POLPE9.417e-1260.0060S acidic ribosomal protein P1 OS=Polyorchis peni... [more]
RLA1_ASPFU2.098e-1138.7460S acidic ribosomal protein P1 OS=Aspergillus fum... [more]
RLA1_PIG2.740e-1136.7060S acidic ribosomal protein P1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835211 ID=CF835211; Name=CF835211; organism=Citrus sinensis; type=EST; length=594bp
CACAAGCCAACCCCTTCCTCTCTTAGTGTGCGATTTTAGAATTATCAATT
GCACTAATGGCCGGAGAGCAAGCTTGCACCTACGCCACTTTGATTCTCCA
CGACGATGGAATCGCAGTCACTGCGGAGAAGATCGCGGCTTTGGTTAAGG
CAGCGAATGTGCAAATAGAGTCTTACTGGCCAAGCCTTTTTGCGAAGTTG
GCTGAAAAGAAAAACTTGGATGATCTCATCTTGAATGTTGGCTCCGGTGG
CGGTGCTGCCGCACCCGTTGCCGCCGCCGCCCCTGCTGGTGGTGCCGCAG
CCGCCGCCCCTGCCGCTGAGGAGAAAAAGGAAGAACCAAAGGAAGAAAGT
GATGATGATATGGGATTCAGTTTGTTTGATTAAACACCGCATTCAGTTGA
GTCAGAATTTGTTCTCTTCTTTTTTTTTTCCTGTTTTTGTTTTATTGGAA
TGTAGGACGCAGCTGAGTGGTATAGCTCAGTTTTTGTTTTTGTTTTAGTT
CTATTTCTCGCGGTGTACTTCGACAGTAAGTTTCTAATTACAAAATGAAT
ATTATCATTCTCTATGCTTATTTACTTCAAAAAAAAAAAAAAAA
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