CF835216

Overview
NameCF835216
Unique NameCF835216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length504
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:680..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 6.481e-44
Identity = 82/110 (74.55%), Postives = 97/110 (88.18%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGE  + + +SIFQKI +FEEELKT+LPKEVE+AR  VENG+P IPNRIKECRSYPLY+ VREELG++ LTGEKV SPGEEFDKVFTA+C GK+IDP+LECL+EW+GA
Sbjct:  596 LVNGEKVRNSTTSIFQKIGSFEEELKTLLPKEVESARLEVENGNPAIPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECLKEWDGA 705
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 6.481e-44
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L N ENEK  N+SIFQKIA FEEELKT+LPKEVE+ R   E+G   IPN+IKECRSYPLY+ VREELG+  LTGEKV SPGEEFDK+FTA+CQGKIIDP+LECL EWNGA
Sbjct:  392 LINAENEKDVNTSIFQKIATFEEELKTILPKEVESTRAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGA 501
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.464e-44
Identity = 79/110 (71.82%), Postives = 97/110 (88.18%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGE+EK  ++SIFQKI AFEEE+KT+LPKEVE+ R  +ENG+  IPNRIKECRSYPLY+ VREELG+  LTGEKV SPGEEFDKVFTA+C+G++IDP+++CL+EWNGA
Sbjct:  600 LKNGESEKNLSTSIFQKIRAFEEEIKTLLPKEVESTRAAIENGNSAIPNRIKECRSYPLYKFVREELGTELLTGEKVRSPGEEFDKVFTALCKGEMIDPLMDCLKEWNGA 709
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.105e-43
Identity = 81/110 (73.64%), Postives = 95/110 (86.36%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGE E++AN+SIF KIAAFEEELKT+LPKEV+NAR  +ENG   IPNRIKECRSYPLYR VREELG++ LTGEK+ SPGEE  KVF A+C GK++DP+LECL+EWNGA
Sbjct:  596 LKNGERERSANTSIFHKIAAFEEELKTILPKEVDNARIEIENGKSEIPNRIKECRSYPLYRFVREELGTSLLTGEKIKSPGEECYKVFNAICAGKLVDPLLECLKEWNGA 705
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.105e-43
Identity = 82/110 (74.55%), Postives = 96/110 (87.27%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGE EK  ++SIFQKIAAFE+ELK +LPKEVE+AR  VE+G+P IPNRIKECRSYPLY+ +REELG+ +LTGEKVTSPGEEFDKVFTAM +G+IIDP+L CL  WNGA
Sbjct:  594 LKNGETEKNLSTSIFQKIAAFEDELKALLPKEVESARAVVESGNPAIPNRIKECRSYPLYKFIREELGTVYLTGEKVTSPGEEFDKVFTAMSKGEIIDPLLACLESWNGA 703
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.444e-43
Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGENEK  N+SIFQKIA+FEEELKT+LPKEVE AR   EN    IPN+IK+CRSYPLY+ VREELG++ LTGEKV SPGEE DKVF+AMCQGKIIDP+LECL EWNGA
Sbjct:  598 LANGENEKNLNTSIFQKIASFEEELKTLLPKEVEGARLAYENDQCAIPNKIKDCRSYPLYKFVREELGTSLLTGEKVISPGEECDKVFSAMCQGKIIDPLLECLGEWNGA 707
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.886e-43
Identity = 83/110 (75.45%), Postives = 91/110 (82.73%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L N ENEK  N+SIFQKI  FEEELKT+LPKEVE AR   ENG   IPN+IKECRSYPLY+ VREELG+  LTGEKV SPGEE DK+FTAMCQGKIIDP+LEC+ EWNGA
Sbjct:  601 LANAENEKNVNTSIFQKITTFEEELKTLLPKEVEGARIAYENGQSAIPNKIKECRSYPLYKFVREELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECIGEWNGA 710
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.216e-43
Identity = 83/110 (75.45%), Postives = 96/110 (87.27%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGE EK +++SIFQKI AFEEELKT LPKEVE+AR  +E G+  IPNRIKECRSYPLY+ VREEL ++ LTGEKV SPGEEFDKVF+A+CQGK+IDP+LECLREWNGA
Sbjct:  506 LINGEKEKDSSTSIFQKIGAFEEELKTHLPKEVESARIELERGNSAIPNRIKECRSYPLYKFVREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGA 615
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.216e-43
Identity = 80/110 (72.73%), Postives = 96/110 (87.27%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            LNNG+ E+  ++SIFQKIAAFE+ELK +LPKEVE AR  +E+G+P IPNRIKECRSYPLY+ VREELG+ +LTGEKV SPGEEF+KVFTAM +G+IIDP+LECL  WNGA
Sbjct:  604 LNNGDKERNLSTSIFQKIAAFEDELKALLPKEVETARAALESGNPAIPNRIKECRSYPLYKFVREELGTEYLTGEKVRSPGEEFEKVFTAMSKGEIIDPLLECLESWNGA 713
[Close]
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.486e-43
Identity = 82/110 (74.55%), Postives = 94/110 (85.45%), Query Frame = -2 
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGENEK  ++S+FQKI AFEEELK +LPKEVE+AR   ++G+  I N+IKECRSYPLY+ VREELG+  LTGEKV SPGEEFDKVFTAMCQGKIIDPMLECL EWNG+
Sbjct:  601 LENGENEKNFSTSVFQKIEAFEEELKALLPKEVESARAAYDSGNSAIDNKIKECRSYPLYKFVREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGS 710
The following BLAST results are available for this feature:
BLAST of CF835216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PAL2_POPKI6.481e-4474.55Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL1_PHAVU6.481e-4475.45Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PALY_CAMSI8.464e-4471.82Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PAL1_RUBID1.105e-4373.64Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PAL1_DAUCA1.105e-4374.55Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PAL2_PHAVU1.444e-4376.36Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PALY_STYHU1.886e-4375.45Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PALY_PERAE3.216e-4375.45Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL3_PETCR3.216e-4372.73Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PALY_POPTR5.486e-4374.55Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835216 ID=CF835216; Name=CF835216; organism=Citrus sinensis; type=EST; length=504bp
AAAGGACAATAAGTCTTATAACCTTATATGAAAAAACCAATAGAAGTGAT
TGAAATATTACAGATGAATTTGTACCACTGACTCGCATGGGCAAATTCTA
TGAACACAAGAACACAAGGGATTGAAGACCGTGTTATTAAACAAAATAAA
AACAACTAACAAATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACATTC
CAGCATTGGATCAATGATCTTGCCCTGGCACATTGCTGTAAACACTTTGT
CAAATTCCTCGCCGGGCGATGTAACTTTTTCCCCTGTTAGAAAATTAGAC
CCGAGCTCCTCCCTCACTAACCTGTACAAAGGGTAAGACCTGCATTCTTT
GATCCTGTTGGGAATTGTTGGACTTCCATTCTCAACAGTCTGCCTGGCGT
TCTCAACTTCTTTGGGCAAAACGGTTTTCAATTCCTCCTCAAAGGCTGCA
ATCTTCTGGAAGATTGAAGAGTTGGCAGTCTTCTCGTTCTCTCCATTGTT
CAGT
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