CF835216

Overview
NameCF835216
Unique NameCF835216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length504
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:680..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.066e-42
Identity = 78/110 (70.91%), Postives = 94/110 (85.45%), Query Frame = -2
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGE+EK  N+SIFQKIA FE+ELKT+LPKEVE+ R   E+G+PT+PN+I  CRSYPLYR VR+ELG+  LTGEKV SPGEE DK+FTA+CQGKIIDP+L+CL +WNGA
Sbjct:  609 LVNGESEKNLNTSIFQKIATFEDELKTLLPKEVESTRAAYESGNPTVPNKINGCRSYPLYRFVRQELGTGLLTGEKVISPGEECDKLFTAICQGKIIDPLLQCLGDWNGA 718          
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.035e-41
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = -2
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            + NGE+EK  NSSIFQKI AFE+EL  VLPKEVE+ R   E+G+P I NRI ECRSYPLYRLVREELG+  LTGEKV SPGEE DKVFTA+C G+IIDP+LECL+ WNGA
Sbjct:  590 MKNGESEKNVNSSIFQKIGAFEDELIAVLPKEVESVRAVFESGNPLIRNRITECRSYPLYRLVREELGTELLTGEKVRSPGEEIDKVFTAICNGQIIDPLLECLKSWNGA 699          
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PALY_MALDO (Phenylalanine ammonia-lyase (Fragment) OS=Malus domestica GN=PAL PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.351e-41
Identity = 79/110 (71.82%), Postives = 91/110 (82.73%), Query Frame = -2
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGE+EK A++SIFQKI AFEEELK +LPKEVE+AR  +E G+  +PNRI ECRSYPLY+ VREELG  +LTGEKV SPGEE DKVF A+CQGKIIDP+L CL  WNGA
Sbjct:  121 LTNGESEKNASTSIFQKIGAFEEELKALLPKEVESARSAIEGGNAAVPNRIAECRSYPLYKFVREELGGEYLTGEKVRSPGEECDKVFQAICQGKIIDPILGCLEGWNGA 230          
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.305e-41
Identity = 80/110 (72.73%), Postives = 92/110 (83.64%), Query Frame = -2
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            LNNG  EK +N+SIFQKI++FE ELK  LPKEVE AR   ENGSP I NRIK+CRSYPLY+ V+ E+GS FLTGEKV SPGEEFDKVF A+C+GK IDPML+CL+EWNGA
Sbjct:  590 LNNGVKEKDSNTSIFQKISSFENELKAALPKEVEAARAEFENGSPAIENRIKDCRSYPLYKFVK-EVGSGFLTGEKVVSPGEEFDKVFNAICEGKAIDPMLDCLKEWNGA 698          
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.932e-41
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = -2
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGENEK A++SIFQKI AFE ELK VLPKEVE+AR  +E+G P I NRI ECRSYPLY+ +REELG+NFLTGEKV SPGEE D+VFTAM +G I+DP+L+CL  WNGA
Sbjct:  599 LKNGENEKNASTSIFQKIEAFEAELKAVLPKEVESARVALEDGKPAIANRITECRSYPLYKFIREELGTNFLTGEKVMSPGEECDRVFTAMSKGLIVDPLLKCLEGWNGA 708          
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL2_CICAR (Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.706e-41
Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = -2
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NG+ E  +++SIFQKI AFE+ELKT+LPKEVE+ R  VENG+P +PNRI ECRSYPLY+ VRE LG++ LTGEK+ SPGEE DKVF A+C G+ IDPML+CL+EWNGA
Sbjct:  604 LENGDREGNSSTSIFQKIGAFEQELKTLLPKEVESVRVDVENGNPAVPNRIIECRSYPLYKFVRENLGTSLLTGEKIRSPGEECDKVFAALCDGRFIDPMLDCLKEWNGA 713          
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.328e-40
Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = -2
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L N  NEK A++SIF KI  FEEELK +LPKEVENAR +VENG+P IPN+I+ECRSYPLY+ VR ELG+  LTGEKV SPGEE D+VF A+C+GK++DP+L CL  WNGA
Sbjct:  591 LANSGNEKDASTSIFHKIGVFEEELKGILPKEVENARASVENGTPAIPNKIEECRSYPLYKFVRGELGTELLTGEKVRSPGEELDQVFNALCEGKLVDPLLACLEAWNGA 700          
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.277e-39
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = -2
Query:  174 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 503
            L NGE E+ +++SIFQKI AFEEELK +LPKEVE+AR  +ENG+P IPNRI + RSYPLY+ VREELG+  LTGEKV SPGEEFDKVFTA+C GK+IDP    L+EWNGA
Sbjct:  457 LMNGEKEQNSSTSIFQKIGAFEEELKILLPKEVESARLELENGNPAIPNRITDRRSYPLYKFVREELGTVLLTGEKVGSPGEEFDKVFTAICAGKLIDPCWSVLKEWNGA 566          
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.940e-38
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = -2
Query:  177 NEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 488
            N+K  +  +F+KI AFE+ELK++LPKEVE+AR   ENG+P  PNRIKECRSYPLY+ VREELG   LTGEK  SP EEF+KV+TAMCQ KIIDP+LECL +WNG
Sbjct:  602 NDKNVSLLVFEKIGAFEDELKSLLPKEVESARVAYENGNPATPNRIKECRSYPLYKFVREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLEDWNG 705          
BLAST of CF835216 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.890e-35
Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = -2
Query:  177 LNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 503
            L NGE E    +S+F K+A FE+EL+ VLPKEVE AR  VENG+    NRI ECRSYPLYR VR+ELG+ +LTGEK  SPGEE DKVF AM QGK ID +LECL+EWNG
Sbjct:  586 LANGEAEAHVETSVFAKLAMFEQELRAVLPKEVEAARSAVENGTAAQQNRIAECRSYPLYRFVRKELGTEYLTGEKTRSPGEEVDKVFVAMNQGKHIDALLECLKEWNG 694          
The following BLAST results are available for this feature:
BLAST of CF835216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PAL1_PEA6.066e-4270.91Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=... [more]
PAL1_SOLLC1.035e-4172.73Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PALY_MALDO1.351e-4171.82Phenylalanine ammonia-lyase (Fragment) OS=Malus do... [more]
PALY_BROFI2.305e-4172.73Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PALY_DIGLA3.932e-4171.82Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL2_CICAR6.706e-4168.18Phenylalanine ammonia-lyase 2 OS=Cicer arietinum G... [more]
PAL2_LITER3.328e-4068.18Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL4_POPKI6.277e-3970.00Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PAL3_PHAVU6.940e-3868.27Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PALY_WHEAT1.890e-3566.06Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835216 ID=CF835216; Name=CF835216; organism=Citrus sinensis; type=EST; length=504bp
AAAGGACAATAAGTCTTATAACCTTATATGAAAAAACCAATAGAAGTGAT
TGAAATATTACAGATGAATTTGTACCACTGACTCGCATGGGCAAATTCTA
TGAACACAAGAACACAAGGGATTGAAGACCGTGTTATTAAACAAAATAAA
AACAACTAACAAATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACATTC
CAGCATTGGATCAATGATCTTGCCCTGGCACATTGCTGTAAACACTTTGT
CAAATTCCTCGCCGGGCGATGTAACTTTTTCCCCTGTTAGAAAATTAGAC
CCGAGCTCCTCCCTCACTAACCTGTACAAAGGGTAAGACCTGCATTCTTT
GATCCTGTTGGGAATTGTTGGACTTCCATTCTCAACAGTCTGCCTGGCGT
TCTCAACTTCTTTGGGCAAAACGGTTTTCAATTCCTCCTCAAAGGCTGCA
ATCTTCTGGAAGATTGAAGAGTTGGCAGTCTTCTCGTTCTCTCCATTGTT
CAGT
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