CF835226

Overview
NameCF835226
Unique NameCF835226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:823..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTF (Chalcone synthase B (Fragment) OS=Ipomoea trifida GN=CHSB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = -3
Query:  328 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEE 624
            +RE+GLTFH  K VP  I++N+E  L +AF P GISDWNSI W+ HPGG AI++ VE          +A+R VLSEYGN++SACVLFILDE+RKKS ++
Sbjct:  266 VREMGLTFHCSKAVPTFITQNVEDCLVKAFEPYGISDWNSIFWVLHPGGNAIVEGVEETLGLAPEKLRASRDVLSEYGNLTSACVLFILDEVRKKSKKD 364          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSB_IPOCO (Chalcone synthase B (Fragment) OS=Ipomoea cordatotriloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.378e-26
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = -3
Query:  328 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEE 624
            +RE+GLTFH  K VP  I++N+E  L +AF P GISDWNSI W+ HPGG AI+D VE          +A+R VLS YGN++SACVLFILDE+RKKS ++
Sbjct:  264 VREMGLTFHCSKAVPTFITQNVEDCLVKAFEPYGISDWNSIFWVLHPGGNAIVDGVEETLGLAPEKLRASRDVLSGYGNLTSACVLFILDEVRKKSKKD 362          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = -3
Query:  364 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLF 624
            LRE+GLTFH  K VP LI++NIE  L +AF P GISDWNSI WI HPGG AILD VE          +A+R VLS+YGN++SACVLF
Sbjct:  264 LREMGLTFHCSKAVPSLITQNIEDCLVKAFEPFGISDWNSIFWILHPGGNAILDGVEEKLGLEPEKLRASRDVLSQYGNLTSACVLF 350          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.486e-21
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = -3
Query:  373 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSAC 624
            LRE+GLTFH  K VP LI++N+E  L +AF P GISDWNSI WI HPGG AILD+VE          +A+R VLSE GN++SAC
Sbjct:  261 LREMGLTFHCSKAVPSLITQNVEDYLVKAFEPFGISDWNSIFWILHPGGIAILDRVEEKLGLEPEKLRASRDVLSESGNLTSAC 344          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = -3
Query:  463 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILD 624
            LRE GLTFHLLKDVPG++SKNI+K+L EAF PLGISD+NSI WIAHPGGPAILD
Sbjct:  258 LREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILD 311          
The following BLAST results are available for this feature:
BLAST of CF835226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSB_IPOTF1.965e-2657.58Chalcone synthase B (Fragment) OS=Ipomoea trifida ... [more]
CHSB_IPOCO4.378e-2657.58Chalcone synthase B (Fragment) OS=Ipomoea cordatot... [more]
CHSC_IPOPU1.192e-2362.07Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHSA_IPONI2.486e-2159.52Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]
CHS4_TRISU2.104e-2083.33Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835226 ID=CF835226; Name=CF835226; organism=Citrus sinensis; type=EST; length=626bp
CTTTTTTTTTTTTTACAATTTACTACTTTCTCAATTCCCAAGAATTTATG
CCCCATTACAAAGCGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGC
ACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCACACGATCAACCA
ATAACTCAACTGTGAAAGCATACAACATAAAGTTACTGAACTACTAAACA
TACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACA
ACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATC
AAGCCCTTCGCCGGTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCA
TCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATGTTACCGTACTCA
CTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTT
AGACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCACA
ATATCGAGTTCCAGTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGG
CTTTTCTCTATATTCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATG
GAAAGTGAGACCGACTTCCCGCAAGT
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