CF835226

Overview
NameCF835226
Unique NameCF835226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:823..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS6_SORBI (Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.395e-56
Identity = 107/132 (81.06%), Postives = 116/132 (87.88%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSI W+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  262 LREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS5_SORBI (Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.395e-56
Identity = 107/132 (81.06%), Postives = 116/132 (87.88%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSI W+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  262 LREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS3_SORBI (Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.395e-56
Identity = 107/132 (81.06%), Postives = 116/132 (87.88%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSI W+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  262 LREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERLRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.380e-56
Identity = 108/132 (81.82%), Postives = 114/132 (86.36%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKKS ++  ATTGEGL+WGVLFGFGPGLTVETVVL SVP+
Sbjct:  263 LREVGLTFHLLKDVPGLISKNIEKSLEEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRKKSAQDGVATTGEGLEWGVLFGFGPGLTVETVVLRSVPL 394          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.380e-56
Identity = 107/132 (81.06%), Postives = 114/132 (86.36%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR V+ EYGNMSSACVLFILDEMRKKS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  264 LREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVMREYGNMSSACVLFILDEMRKKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.108e-56
Identity = 106/132 (80.30%), Postives = 116/132 (87.88%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSI W+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEG +WGVLFGFGPGLTVETVVLHSVPI
Sbjct:  262 LREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGRATTGEGFEWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_MAIZE (Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.108e-56
Identity = 105/132 (79.55%), Postives = 115/132 (87.12%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGL FHLLKDVPGLISKNIE++L +AF PLGISDWNSI W+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+  E+ ++TTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  261 LREVGLAFHLLKDVPGLISKNIERALEDAFEPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKARMRATRHVLSEYGNMSSACVLFILDEMRKRPAEDGQSTTGEGLDWGVLFGFGPGLTVETVVLHSVPI 392          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.302e-56
Identity = 107/132 (81.06%), Postives = 114/132 (86.36%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNI KSL EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMR+KS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  264 LREVGLTFHLLKDVPGLISKNIVKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVLSEYGNMSSACVLFILDEMRRKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.925e-56
Identity = 106/132 (80.30%), Postives = 115/132 (87.12%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKN+EKSL+EAF PLGISDWNS+ WIAHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMR+KS E+   TTGEG++WGVLFGFGPGLTVETVVLHSV I
Sbjct:  258 LREVGLTFHLLKDVPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLSLKPEKLRATRHVLSEYGNMSSACVLFILDEMRRKSKEDGLKTTGEGIEWGVLFGFGPGLTVETVVLHSVAI 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.925e-56
Identity = 109/130 (83.85%), Postives = 113/130 (86.92%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNSI WIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRK S +E  +TTGEGLDWGVLFGFGPGLTVETVVLHSV
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIEKSLIEAFQPLGISDWNSIFWIAHPGGPAILDQVELKLGLKPEKLQATRQVLSDYGNMSSACVLFILDEMRKASSKEGLSTTGEGLDWGVLFGFGPGLTVETVVLHSV 387          
The following BLAST results are available for this feature:
BLAST of CF835226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS6_SORBI1.395e-5681.06Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=... [more]
CHS5_SORBI1.395e-5681.06Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=... [more]
CHS3_SORBI1.395e-5681.06Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=... [more]
CHSY_MATIN2.380e-5681.82Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHSY_CARAN2.380e-5681.06Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS2_SORBI3.108e-5680.30Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]
CHS1_MAIZE3.108e-5679.55Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV... [more]
CHSY_ARATH5.302e-5681.06Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHSY_HYPAN6.925e-5680.30Chalcone synthase OS=Hypericum androsaemum PE=1 SV... [more]
CHS2_SOLTU6.925e-5683.85Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835226 ID=CF835226; Name=CF835226; organism=Citrus sinensis; type=EST; length=626bp
CTTTTTTTTTTTTTACAATTTACTACTTTCTCAATTCCCAAGAATTTATG
CCCCATTACAAAGCGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGC
ACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCACACGATCAACCA
ATAACTCAACTGTGAAAGCATACAACATAAAGTTACTGAACTACTAAACA
TACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACA
ACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATC
AAGCCCTTCGCCGGTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCA
TCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATGTTACCGTACTCA
CTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTT
AGACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCACA
ATATCGAGTTCCAGTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGG
CTTTTCTCTATATTCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATG
GAAAGTGAGACCGACTTCCCGCAAGT
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