CF835226

Overview
NameCF835226
Unique NameCF835226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 6.925e-56
Identity = 109/130 (83.85%), Postives = 113/130 (86.92%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNSI WIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRK S +E  +TTGEGLDWGVLFGFGPGLTVETVVLHSV
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIEKSLIEAFQPLGISDWNSIFWIAHPGGPAILDQVELKLSLKPEKLRATRQVLSDYGNMSSACVLFILDEMRKASSKEGLSTTGEGLDWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.044e-56
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = -3
Query:  223 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 624
            LREVGLTFHLLKDVPGLISKNIE++L +AF PLGI DWNS+ WIAHPGGPAILD VE+         +ATR VLSEYGNMSSACVLFI+DEMRK+S E+   TTGEG+DWGVLFGFGPGLTVETVVLHSVP+ A
Sbjct:  261 LREVGLTFHLLKDVPGLISKNIERALEDAFKPLGIDDWNSVFWIAHPGGPAILDMVEAKVNLNKERMRATRHVLSEYGNMSSACVLFIMDEMRKRSAEDGHTTTGEGMDWGVLFGFGPGLTVETVVLHSVPVTA 394          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_SORBI (Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.044e-56
Identity = 105/132 (79.55%), Postives = 115/132 (87.12%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNIE++L EAF PLGI+D+NSI W+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+ + TTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  262 LREVGLTFHLLKDVPGLISKNIERALEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQTTTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_SECCE (Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.044e-56
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = -3
Query:  223 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 624
            LREVGLTFHLLKDVPGLISKNIE++L +AF PLGI DWNS+ WIAHPGGPAILD VE+         +ATR VLSEYGNMSSACVLFI+DEMRK+S E+   TTGEG+DWGVLFGFGPGLTVETVVLHSVP+ A
Sbjct:  259 LREVGLTFHLLKDVPGLISKNIERALEDAFKPLGIDDWNSVFWIAHPGGPAILDMVEAKVNLNKERMRATRHVLSEYGNMSSACVLFIMDEMRKRSAEDGHTTTGEGMDWGVLFGFGPGLTVETVVLHSVPVTA 392          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.543e-55
Identity = 106/131 (80.92%), Postives = 113/131 (86.26%), Query Frame = -3
Query:  232 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 624
            LREVGLTFHLLKDVPGLISKNIEK+L+ AF+PLGI+DWNSI WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFI+DEMRKKS E    TTGEGL+WGVLFGFGPGLTVETVVLHSVP
Sbjct:  261 LREVGLTFHLLKDVPGLISKNIEKALTTAFSPLGINDWNSIFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFIIDEMRKKSSENGAGTTGEGLEWGVLFGFGPGLTVETVVLHSVP 391          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.631e-55
Identity = 107/131 (81.68%), Postives = 112/131 (85.50%), Query Frame = -3
Query:  232 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 624
            LREVGLTFHLLKDVPGLISKNI KSL EAF PLGISDWNSI WIAHPGGPAILDQVE+         K+TRQVL +YGNMSSACVLFILDEMRK S ++   TTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIRKSLVEAFKPLGISDWNSIFWIAHPGGPAILDQVETELSLKPEKLKSTRQVLRDYGNMSSACVLFILDEMRKASAKDGHRTTGEGLDWGVLFGFGPGLTVETVVLHSVP 388          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.631e-55
Identity = 106/130 (81.54%), Postives = 111/130 (85.38%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVG+TFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+ WIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMR+KS E+   TTGEGLDWGVLFGFGPGLTVETVVLHS+
Sbjct:  258 LREVGVTFHLLKDVPGLISKNIEKSLVEAFQPLGISDWNSLFWIAHPGGPAILDQVEEKLALKPEKLGATRHVLSEYGNMSSACVLFILDEMRRKSAEKGLKTTGEGLDWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.437e-55
Identity = 106/130 (81.54%), Postives = 111/130 (85.38%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LRE GLTFHLLKDVPGLISKNI+KSL+EAF PLGISDWNSI WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKKS E+   T GEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  257 LREAGLTFHLLKDVPGLISKNIQKSLTEAFKPLGISDWNSIFWIAHPGGPAILDQVEEKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAEDGLETAGEGLEWGVLFGFGPGLTVETVVLHSV 386          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.488e-55
Identity = 104/134 (77.61%), Postives = 113/134 (84.33%), Query Frame = -3
Query:  223 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 624
            LREVGLTFHLLKDVPGLISKNIE++L EAF PLGI  WNS+ WIAH GGPAILD VE+         +ATR VLSEYGNMSSACVLFI+DEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  261 LREVGLTFHLLKDVPGLISKNIERALEEAFKPLGIDHWNSVFWIAHQGGPAILDMVEAKVNLNKERMRATRHVLSEYGNMSSACVLFIMDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPISA 394          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.488e-55
Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVGLTFHLLKDVPGLISKNIEKSL+EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKKS  +   TTGEGL+WGVLFGFGPGLTVETVVLHS+
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIEKSLAEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAADGLKTTGEGLEWGVLFGFGPGLTVETVVLHSL 387          
The following BLAST results are available for this feature:
BLAST of CF835226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_SOLLC6.925e-5683.85Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]
CHS2_SECCE9.044e-5676.87Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHS1_SORBI9.044e-5679.55Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=... [more]
CHS1_SECCE9.044e-5676.87Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3... [more]
CHS1_GERHY1.543e-5580.92Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]
CHS1_DAUCA2.631e-5581.68Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
CHS1_CASGL2.631e-5581.54Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]
CHS1_CITSI3.437e-5581.54Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS1_HORVU4.488e-5577.61Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHS1_CAMSI4.488e-5581.54Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835226 ID=CF835226; Name=CF835226; organism=Citrus sinensis; type=EST; length=626bp
CTTTTTTTTTTTTTACAATTTACTACTTTCTCAATTCCCAAGAATTTATG
CCCCATTACAAAGCGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGC
ACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCACACGATCAACCA
ATAACTCAACTGTGAAAGCATACAACATAAAGTTACTGAACTACTAAACA
TACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACA
ACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATC
AAGCCCTTCGCCGGTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCA
TCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATGTTACCGTACTCA
CTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTT
AGACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCACA
ATATCGAGTTCCAGTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGG
CTTTTCTCTATATTCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATG
GAAAGTGAGACCGACTTCCCGCAAGT
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