CF835226

Overview
NameCF835226
Unique NameCF835226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:823..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSA_PETHY (Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.862e-55
Identity = 107/130 (82.31%), Postives = 111/130 (85.38%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+ WIAHPGGPAILDQVE          KATR VLS+YGNMSSACVLFILDEMRK S +E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIEKSLEEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKPEKLKATRNVLSDYGNMSSACVLFILDEMRKASAKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.656e-55
Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVGLTFHLLKDVPGLISKNIEKSL+EA  P+GISDWNS+ WIAHPGGPAILDQVE+         +ATRQVLS+YGNMSSACVLFILDE+R+KS E+   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  101 LREVGLTFHLLKDVPGLISKNIEKSLNEALKPIGISDWNSLFWIAHPGGPAILDQVEAKLALKPEKLEATRQVLSDYGNMSSACVLFILDEVRRKSAEKGLETTGEGLEWGVLFGFGPGLTVETVVLHSV 230          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSJ_PETHY (Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 9.999e-55
Identity = 107/130 (82.31%), Postives = 111/130 (85.38%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVGLTFHLLKDVPGLISKNI+KSL EAF PLGISDWNSI WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRK S +E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIQKSLVEAFQPLGISDWNSIFWIAHPGGPAILDQVELKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.999e-55
Identity = 106/130 (81.54%), Postives = 111/130 (85.38%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR+VLS YGNMSSACVLFILDEMRK S +E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKQEKLRATREVLSNYGNMSSACVLFILDEMRKASTKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.999e-55
Identity = 106/131 (80.92%), Postives = 111/131 (84.73%), Query Frame = -3
Query:  232 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 624
            LREVGLTFHLLKDVPGLISKNI KSL EAF PLGISDWNSI WIAHPGGPAILDQVE+         K+TRQVL +YGNMSSACVLFILDEMR  S ++   TTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIRKSLVEAFKPLGISDWNSIFWIAHPGGPAILDQVETELSLKPDKLKSTRQVLRDYGNMSSACVLFILDEMRNASAKDGHRTTGEGLDWGVLFGFGPGLTVETVVLHSVP 388          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 9.999e-55
Identity = 106/130 (81.54%), Postives = 111/130 (85.38%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR+VLS YGNMSSACVLFILDEMRK S +E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKPEKLRATREVLSNYGNMSSACVLFILDEMRKASTKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.306e-54
Identity = 106/132 (80.30%), Postives = 113/132 (85.61%), Query Frame = -3
Query:  232 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVE-SXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF P+GI+DWNSI WIAHPGGPAILDQVE           +ATR +LSEYGNMSSACVLFILDEMRKKS    +ATTG+GL+WGVLFGFGPGLTVETVVLHSVP
Sbjct:  261 LREVGLTFHLLKDVPGLISKNIEKSLIEAFKPIGINDWNSIFWIAHPGGPAILDQVEHKLAPGRRANSRATRHILSEYGNMSSACVLFILDEMRKKSARRREATTGDGLEWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.306e-54
Identity = 106/130 (81.54%), Postives = 110/130 (84.62%), Query Frame = -3
Query:  235 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 624
            LREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR+VLS YGNMSSACVLFILDEMRK S  E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  258 LREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKQEKLRATREVLSNYGNMSSACVLFILDEMRKASTNEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS5_SOYBN (Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.306e-54
Identity = 106/132 (80.30%), Postives = 113/132 (85.61%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNIEK+L EAF PLGISD+NSI WIAHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILD+MRKKS+E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  257 LREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTV 388          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_DIAMO (Chalcone synthase OS=Dianthus monspessulanus GN=CHS PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.706e-54
Identity = 100/132 (75.76%), Postives = 113/132 (85.61%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPG+ISKNI  +L EAF+P+G+SDWN++ WIAHPGGPAILDQVE+          ATR VLS++GNMSSACVLFILDEMRKKS+ +   TTGEGLDWGVLFGFGPGLTVETVVLHSVP+
Sbjct:  258 LREVGLTFHLLKDVPGIISKNITNALEEAFSPIGVSDWNNLFWIAHPGGPAILDQVEAKLGLKEEKLAATRNVLSDFGNMSSACVLFILDEMRKKSLRDGATTTGEGLDWGVLFGFGPGLTVETVVLHSVPL 389          
The following BLAST results are available for this feature:
BLAST of CF835226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSA_PETHY5.862e-5582.31Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=... [more]
CHSY_MALDO7.656e-5580.00Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
CHSJ_PETHY9.999e-5582.31Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=... [more]
CHSB_SOLTU9.999e-5581.54Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
CHS9_DAUCA9.999e-5580.92Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHS1_SOLLC9.999e-5581.54Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]
CHSY_CHRAE1.306e-5480.30Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHSA_SOLTU1.306e-5481.54Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A... [more]
CHS5_SOYBN1.306e-5480.30Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV... [more]
CHSY_DIAMO1.706e-5475.76Chalcone synthase OS=Dianthus monspessulanus GN=CH... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835226 ID=CF835226; Name=CF835226; organism=Citrus sinensis; type=EST; length=626bp
CTTTTTTTTTTTTTACAATTTACTACTTTCTCAATTCCCAAGAATTTATG
CCCCATTACAAAGCGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGC
ACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCACACGATCAACCA
ATAACTCAACTGTGAAAGCATACAACATAAAGTTACTGAACTACTAAACA
TACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACA
ACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATC
AAGCCCTTCGCCGGTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCA
TCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATGTTACCGTACTCA
CTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTT
AGACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCACA
ATATCGAGTTCCAGTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGG
CTTTTCTCTATATTCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATG
GAAAGTGAGACCGACTTCCCGCAAGT
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