CF835226

Overview
NameCF835226
Unique NameCF835226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:823..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.481e-54
Identity = 101/131 (77.10%), Postives = 114/131 (87.02%), Query Frame = -3 
Query:  232 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 624
            L+EVGLTFHLLKDVP LI+KNIEK+L +AF+PL I+DWNSI WIAHPGGPAILDQVE          +A+R VLSEYGNMSSACVLFILDEMRKKS+++ K TTGEGL+WGVLFGFGPGLTVETVVLHS+P
Sbjct:  264 LKEVGLTFHLLKDVPALIAKNIEKALIQAFSPLNINDWNSIFWIAHPGGPAILDQVEFKLGLREEKLRASRHVLSEYGNMSSACVLFILDEMRKKSIKDGKTTTGEGLEWGVLFGFGPGLTVETVVLHSLP 394
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS3_SOYBN (Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.465e-54
Identity = 105/132 (79.55%), Postives = 112/132 (84.85%), Query Frame = -3 
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            L EVGLTFHLLKDVPGLISKNIEK+L EAF PLGISD+NSI WIAHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILD+MRKKS+E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  257 LGEVGLTFHLLKDVPGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTV 388
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS7_IPOBA (Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-DIII PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.106e-53
Identity = 103/133 (77.44%), Postives = 109/133 (81.95%), Query Frame = -3 
Query:  226 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 624
            LREVGLTFHLLKDVP ++S NIEK L EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRK S      TTGEGL+WGVLFGFGPGLT+ETVVLHSVPIK
Sbjct:  257 LREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQVEDKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSNAGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVPIK 389
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.106e-53
Identity = 103/133 (77.44%), Postives = 109/133 (81.95%), Query Frame = -3 
Query:  226 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 624
            LREVGLTFHLLKDVP ++S NIEK L EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRK S      TTGEGL+WGVLFGFGPGLT+ETVVLHSVPIK
Sbjct:  257 LREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQVEDKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSNAGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVPIK 389
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_IPOBA (Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF2 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.106e-53
Identity = 103/133 (77.44%), Postives = 109/133 (81.95%), Query Frame = -3 
Query:  226 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 624
            LREVGLTFHLLKDVP ++S NIEK L EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRK S      TTGEGL+WGVLFGFGPGLT+ETVVLHSVPIK
Sbjct:  257 LREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQVEDKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSNAGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVPIK 389
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_MEDSA (Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.106e-53
Identity = 104/132 (78.79%), Postives = 112/132 (84.85%), Query Frame = -3 
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVPG++SKNI+K+L EAF PL ISD+NSI WIAHPGGPAILDQVE          KATR+VLSEYGNMSSACVLFILDEMRKKSV+    TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  258 LREAGLTFHLLKDVPGIVSKNIDKALIEAFQPLNISDYNSIFWIAHPGGPAILDQVEEKLGLKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSVQAGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHSY_DIACA (Chalcone synthase OS=Dianthus caryophyllus GN=CHS PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.886e-53
Identity = 98/132 (74.24%), Postives = 112/132 (84.85%), Query Frame = -3 
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPG+ISKNI  +L +AF+P+G+SDWN++ WIAHPGGPAILDQVE+          ATR VLS++GNMSSACVLFILDEMRKKS+ +   TTGEGLDWGVLFGFGP LTVETVVLHSVP+
Sbjct:  258 LREVGLTFHLLKDVPGIISKNITNALEDAFSPIGVSDWNNLFWIAHPGGPAILDQVEAKLGLKEEKLAATRNVLSDFGNMSSACVLFILDEMRKKSLRDGATTTGEGLDWGVLFGFGPSLTVETVVLHSVPL 389
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS6_SOYBN (Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.463e-53
Identity = 103/132 (78.03%), Postives = 112/132 (84.85%), Query Frame = -3 
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHLLKDVPGLISKNI+K+L EAF PLGI D+NSI WIAHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILD+MRKKS+E    TTGEGL+WGVLFGFGPGLTVETVVL SV +
Sbjct:  257 LREVGLTFHLLKDVPGLISKNIQKALVEAFQPLGIDDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLEWGVLFGFGPGLTVETVVLRSVTV 388
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.463e-53
Identity = 102/132 (77.27%), Postives = 112/132 (84.85%), Query Frame = -3 
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVPG++SKNI+K+L EAF PL ISD+NSI WIAHPGGPAILDQVE          KATR+VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGLDWGVLFGFGPGLT+ETVVLHSV +
Sbjct:  154 LREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQQGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAL 285
[Close]
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS9_MEDSA (Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.217e-53
Identity = 103/132 (78.03%), Postives = 111/132 (84.09%), Query Frame = -3 
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVPG++SKNI+K+L EAF PL ISD+NSI WIAHPGGPAILDQVE          KATR+VLSEYGNMSSACVLFILDEMRKKS +    TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  258 LREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQAGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389
The following BLAST results are available for this feature:
BLAST of CF835226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS3_GERHY6.481e-5477.10Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHS3_SOYBN8.465e-5479.55Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV... [more]
CHS7_IPOBA1.106e-5377.44Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-D... [more]
CHS4_IPOBA1.106e-5377.44Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS2_IPOBA1.106e-5377.44Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS1_MEDSA1.106e-5378.79Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=... [more]
CHSY_DIACA1.886e-5374.24Chalcone synthase OS=Dianthus caryophyllus GN=CHS ... [more]
CHS6_SOYBN2.463e-5378.03Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV... [more]
CHS6_MEDSA2.463e-5377.27Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS9_MEDSA3.217e-5378.03Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06O01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835226 ID=CF835226; Name=CF835226; organism=Citrus sinensis; type=EST; length=626bp
CTTTTTTTTTTTTTACAATTTACTACTTTCTCAATTCCCAAGAATTTATG
CCCCATTACAAAGCGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGC
ACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCACACGATCAACCA
ATAACTCAACTGTGAAAGCATACAACATAAAGTTACTGAACTACTAAACA
TACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACA
ACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATC
AAGCCCTTCGCCGGTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCA
TCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATGTTACCGTACTCA
CTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTT
AGACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCACA
ATATCGAGTTCCAGTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGG
CTTTTCTCTATATTCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATG
GAAAGTGAGACCGACTTCCCGCAAGT
back to top