CF835226

Overview
NameCF835226
Unique NameCF835226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:823..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 5.487e-53
Identity = 102/133 (76.69%), Postives = 108/133 (81.20%), Query Frame = -3
Query:  226 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 624
            LREVGLTFHLLKDVP ++S  IEK L EAF PLGISDWNS+ WIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRK S      TTGEGL+WGVLFGFGPGLT+ETVVLHSVPIK
Sbjct:  257 LREVGLTFHLLKDVPSVVSNKIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQVEDKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSNAGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVPIK 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: THS5_VITVI (Stilbene synthase 5 OS=Vitis vinifera GN=GSVIVT00007357001 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.166e-53
Identity = 102/132 (77.27%), Postives = 113/132 (85.61%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LREVGLTFHL  +VP LIS+NIEK LS+AF PLGIS+WNS+ WIAHPGGPAILD VE+         +ATR VLSEYGNMSSACVLFILDEMRKKS++  KATTGEGLDWGVLFGFGPGLT+ETVVLHSVP+
Sbjct:  258 LREVGLTFHLWPNVPTLISENIEKCLSQAFDPLGISNWNSLFWIAHPGGPAILDAVEAKLNLEKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGEKATTGEGLDWGVLFGFGPGLTIETVVLHSVPM 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.166e-53
Identity = 102/132 (77.27%), Postives = 110/132 (83.33%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVPG++SKNI K+L EAF PL I D+NSI WIAHPGGPAILDQVE          KATR+VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  258 LREAGLTFHLLKDVPGIVSKNINKALVEAFQPLNIDDYNSIFWIAHPGGPAILDQVEEKLGLKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQQGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS5_PEA (Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.166e-53
Identity = 101/132 (76.52%), Postives = 112/132 (84.85%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVP ++SKNI+K+L EAF PLGISD+NSI WIAHPGGPAILDQVE          KATR+VLSEYGNMSSACVLFILDEMR+KS++    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  258 LREAGLTFHLLKDVPAIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRRKSIQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 7.166e-53
Identity = 101/132 (76.52%), Postives = 112/132 (84.85%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVPG++SKNI+K+L EAF PLGISD+NSI WIAHPGGPAILDQVE          +ATR+VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  258 LREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMRATREVLSEYGNMSSACVLFILDEMRKKSTQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS3_PEA (Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.166e-53
Identity = 101/132 (76.52%), Postives = 112/132 (84.85%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVP ++SKNI+K+L EAF PLGISD+NSI WIAHPGGPAILDQVE          KATR+VLSEYGNMSSACVLFILDEMR+KS++    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  258 LREAGLTFHLLKDVPAIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRRKSIQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.166e-53
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVPG++SKNI+K+L EAF PL ISD+NSI WIAHPGGPAILDQVE          KATR+VLSEYGNMSSACVLFILDEMRKKS +    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  258 LREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS1_TRISU (Chalcone synthase 1 OS=Trifolium subterraneum GN=CHS1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.166e-53
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVPG++SKNI+K+L EAF PL ISD+NSI WIAHPGGPAILDQVE          KATR VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  258 LREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNISDYNSIFWIAHPGGPAILDQVEQKLSLKPEKMKATRDVLSEYGNMSSACVLFILDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS4_PEA (Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.359e-53
Identity = 101/132 (76.52%), Postives = 112/132 (84.85%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVP ++SKNI+K+L EAF PLGISD+NSI WIAHPGGPAILDQVE          KATR+VLSEYGNMSSACVLFILDEMR+KS++    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  258 LREAGLTFHLLKDVPAIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRRKSIQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVVI 389          
BLAST of CF835226 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.359e-53
Identity = 101/132 (76.52%), Postives = 112/132 (84.85%), Query Frame = -3
Query:  229 LREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSILWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 624
            LRE GLTFHLLKDVPG++SKNI+K+L EAF PLGISD+NSI WIAHPGGPAILDQVE          +ATR+VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  258 LREAGLTFHLLKDVPGIVSKNIDKALVEAFKPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMRATREVLSEYGNMSSACVLFILDEMRKKSTQDGLNTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
The following BLAST results are available for this feature:
BLAST of CF835226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS1_IPOBA5.487e-5376.69Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
THS5_VITVI7.166e-5377.27Stilbene synthase 5 OS=Vitis vinifera GN=GSVIVT000... [more]
CHS6_PEA7.166e-5377.27Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 ... [more]
CHS5_PEA7.166e-5376.52Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 ... [more]
CHS4_MEDSA7.166e-5376.52Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]
CHS3_PEA7.166e-5376.52Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 ... [more]
CHS2_TRISU7.166e-5377.27Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]
CHS1_TRISU7.166e-5377.27Chalcone synthase 1 OS=Trifolium subterraneum GN=C... [more]
CHS4_PEA9.359e-5376.52Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 ... [more]
CHS2_PEA9.359e-5376.52Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835226 ID=CF835226; Name=CF835226; organism=Citrus sinensis; type=EST; length=626bp
CTTTTTTTTTTTTTACAATTTACTACTTTCTCAATTCCCAAGAATTTATG
CCCCATTACAAAGCGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGC
ACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCACACGATCAACCA
ATAACTCAACTGTGAAAGCATACAACATAAAGTTACTGAACTACTAAACA
TACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACA
ACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATC
AAGCCCTTCGCCGGTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCA
TCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATGTTACCGTACTCA
CTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTT
AGACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCACA
ATATCGAGTTCCAGTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGG
CTTTTCTCTATATTCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATG
GAAAGTGAGACCGACTTCCCGCAAGT
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