CF835228

Overview
NameCF835228
Unique NameCF835228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:451..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFN (40S ribosomal protein S1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.716e-32
Identity = 71/114 (62.28%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_NEOFI (40S ribosomal protein S1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.008e-31
Identity = 71/114 (62.28%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFU (40S ribosomal protein S1 OS=Aspergillus fumigatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.008e-31
Identity = 71/114 (62.28%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFC (40S ribosomal protein S1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.008e-31
Identity = 71/114 (62.28%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ASPTN (40S ribosomal protein S1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.719e-31
Identity = 70/114 (61.40%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ASPNC (40S ribosomal protein S1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.719e-31
Identity = 70/114 (61.40%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_PHANO (40S ribosomal protein S1 OS=Phaeosphaeria nodorum GN=RPS1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.245e-31
Identity = 69/112 (61.61%), Postives = 85/112 (75.89%), Query Frame = -2
Query:  245 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPI 577
            GFTKR PNQ+K+T YA +SQIR IR+KM EIM   A+SC L  L +K I E+IGREIEK+T  IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S +D G K+ER   E +
Sbjct:  140 GFTKRRPNQIKKTTYAASSQIRAIRKKMVEIMTRDASSCTLAQLTQKLIPEVIGREIEKSTQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSADDSGQKVEREFKETV 251          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_NEUCR (40S ribosomal protein S1 OS=Neurospora crassa GN=crp-8 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.932e-31
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEA 574
            FTKR PNQVK+T YA +SQIR IRRKM EI+  +A+SC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+  S++ G K+ER   E + E+
Sbjct:  142 FTKRRPNQVKKTTYAASSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMSLHGESGSDEAGQKVEREFKETVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.531e-31
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA++SQIR IR+KM EIM  +A+SC L  L  K I E+IGREIEKAT  IYPLQ+V IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREASSCSLAQLTSKLIPEVIGREIEKATQGIYPLQHVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.114e-30
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA++SQIR IR+KM EI+  +AASC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
RS3A_ASPFN7.716e-3262.2840S ribosomal protein S1 OS=Aspergillus flavus (st... [more]
RS3A_NEOFI1.008e-3162.2840S ribosomal protein S1 OS=Neosartorya fischeri (... [more]
RS3A_ASPFU1.008e-3162.2840S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPFC1.008e-3162.2840S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPTN1.719e-3161.4040S ribosomal protein S1 OS=Aspergillus terreus (s... [more]
RS3A_ASPNC1.719e-3161.4040S ribosomal protein S1 OS=Aspergillus niger (str... [more]
RS3A_PHANO2.245e-3161.6140S ribosomal protein S1 OS=Phaeosphaeria nodorum ... [more]
RS3A_NEUCR2.932e-3162.2840S ribosomal protein S1 OS=Neurospora crassa GN=c... [more]
RS3A_EMENI8.531e-3159.6540S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3A_TALSN1.114e-3059.6540S ribosomal protein S1 OS=Talaromyces stipitatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bp
CCCCTGAGTTTTTTTTTTTTTTTTATCTAATCCACTGGAATAAAGAATAA
GGTAACCCCTTTTAATACCACAAACCGCTGCAGCCATCTCAAATATCACC
GTAGAATAAAATATGTAAACTCAAAACAAATTTGAGTTCATCACAAACAA
AACTGCCCAAAAATTACTAGATCTGATTGGTTATAAAGACAAACTACAAA
AATTTCTTTATTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGG
CTCATCAGCTGGCCTTTCCATCTTTACACCAACATCCTCAGAGTAATCAC
CATGAACCTCCATCAACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATC
TTCACTTTGCGAATGAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGC
CTTCTCAATCTCTCTTCCAATTATTTCAGCAATGAACTTTTCGACCAAGC
CCTTAAGATCACAGGATGCTGCCTGAGCAATCATGATCTCCCTCATCTTG
CGGCGAATCTGTCTAATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAAC
CTGATTTGGAAGTCTCTTGGTGAATCCA
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