CF835228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 1.114e-30 Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = -2 Query: 236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPEA 574 FTKR PNQ+K+T YA SQIR IRRKM EI+ +A+SC L L K I E+IGREIEKAT IYPLQNV IRKVK+LK PKFDLG LM +HG+ S D G K+ER E + E+ Sbjct: 142 FTKRRPNQIKKTTYAATSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMTLHGESSTDEQGQKVEREFREQVLES 255
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.482e-30 Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = -2 Query: 236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574 FTKR PNQ+K+T YA +SQIR IR+KM EI+ +AASC L L K I E+IGREIEK+T IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ ++D G K+ER E + E+ Sbjct: 142 FTKRRPNQIKKTTYAGSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 3.242e-30 Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = -2 Query: 239 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPE 574 FTKR PNQ+K+T YA +SQIR IRRKM +I+ +A+SC L L K I E+IGREIEK+T IYPLQNV IRKVK+LK+PKFDLG LM +HG+ ++D G K+ER E + E Sbjct: 142 FTKRRPNQIKKTTYAASSQIRAIRRKMTDIIQREASSCTLTQLTSKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALMALHGESGTDDQGQKVEREFKERVLE 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 4.234e-30 Identity = 66/114 (57.89%), Postives = 87/114 (76.32%), Query Frame = -2 Query: 236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574 FTKR PNQ+K+T YA++SQIR IR+KM EI+ +A++C L L K I E+IGREIEK+T IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ ++D G K+ER E + E+ Sbjct: 142 FTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESATDDKGQKVEREFKETVLES 255
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30 Identity = 65/114 (57.02%), Postives = 85/114 (74.56%), Query Frame = -2 Query: 236 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEA 577 GFTKR NQVK+T YAQ SQI QIR+KM +I++ +A++ L L K I E+IGREIEKAT +IYPLQNV+IRKVK+LK PKFDLG L+ +HG ++D G K+ R + + E+ Sbjct: 141 GFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNGKKVNREFKDVVLES 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30 Identity = 68/113 (60.18%), Postives = 84/113 (74.34%), Query Frame = -2 Query: 239 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 574 FTKR PNQ+K+T YA +SQIR IR+KM EI+ +A++C L L K I E+IGREIEKAT IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D G K+ER E + E Sbjct: 142 FTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30 Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = -2 Query: 236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574 FTKR PNQ+K+T YAQ+SQIR IR+KM EI+ QA+SC L L K + E+IGREIEK+T IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER E + E+ Sbjct: 142 FTKRRPNQIKKTTYAQSSQIRAIRKKMTEIIQRQASSCTLTQLT-KLVPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGEASTDDKGQKVEREFKEKVLES 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_BOTFB (40S ribosomal protein S1 OS=Botryotinia fuckeliana (strain B05.10) GN=rps1 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30 Identity = 68/113 (60.18%), Postives = 84/113 (74.34%), Query Frame = -2 Query: 239 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 574 FTKR PNQ+K+T YA +SQIR IR+KM EI+ +A++C L L K I E+IGREIEKAT IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D G K+ER E + E Sbjct: 142 FTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30 Identity = 68/113 (60.18%), Postives = 84/113 (74.34%), Query Frame = -2 Query: 239 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 574 FTKR PNQ+K+T YA +SQIR IRRKM EI+ +A++C L+ L K I E+IGREIEKAT IYPLQNV IRKVK+LK PKFDLG L+ +HG+ + D G K+ER E + E Sbjct: 142 FTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGESTTDEQGQKVEREFKERVLE 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3) HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29 Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = -2 Query: 269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEK-ATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 574 FTK+ PN R YAQ+SQI IRRKMREIM+ +A +CDLK LV KFI E+IG+EI++ + IYPLQ+ FIRKVKILKAPKFDL KLMEVHGDY+E+VG K+ Sbjct: 141 FTKKRPNHT-RNFYAQSSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241 The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 150
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bpback to top |