CF835228

Overview
NameCF835228
Unique NameCF835228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:451..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.114e-30
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA  SQIR IRRKM EI+  +A+SC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+ S D  G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYAATSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMTLHGESSTDEQGQKVEREFREQVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.482e-30
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA +SQIR IR+KM EI+  +AASC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYAGSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.242e-30
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = -2
Query:  239 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPE 574
            FTKR PNQ+K+T YA +SQIR IRRKM +I+  +A+SC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG LM +HG+  ++D G K+ER   E + E
Sbjct:  142 FTKRRPNQIKKTTYAASSQIRAIRRKMTDIIQREASSCTLTQLTSKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALMALHGESGTDDQGQKVEREFKERVLE 254          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.234e-30
Identity = 66/114 (57.89%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YA++SQIR IR+KM EI+  +A++C L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESATDDKGQKVEREFKETVLES 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 65/114 (57.02%), Postives = 85/114 (74.56%), Query Frame = -2
Query:  236 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEA 577
            GFTKR  NQVK+T YAQ SQI QIR+KM +I++ +A++  L  L  K I E+IGREIEKAT +IYPLQNV+IRKVK+LK PKFDLG L+ +HG  ++D G K+ R   + + E+
Sbjct:  141 GFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNGKKVNREFKDVVLES 254          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 68/113 (60.18%), Postives = 84/113 (74.34%), Query Frame = -2
Query:  239 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 574
            FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:  142 FTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574
            FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  QA+SC L  L  K + E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  142 FTKRRPNQIKKTTYAQSSQIRAIRKKMTEIIQRQASSCTLTQLT-KLVPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGEASTDDKGQKVEREFKEKVLES 254          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_BOTFB (40S ribosomal protein S1 OS=Botryotinia fuckeliana (strain B05.10) GN=rps1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 68/113 (60.18%), Postives = 84/113 (74.34%), Query Frame = -2
Query:  239 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 574
            FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:  142 FTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 68/113 (60.18%), Postives = 84/113 (74.34%), Query Frame = -2
Query:  239 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 574
            FTKR PNQ+K+T YA +SQIR IRRKM EI+  +A++C L+ L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:  142 FTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGESTTDEQGQKVEREFKERVLE 254          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.101e-29
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = -2
Query:  269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEK-ATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 574
            FTK+ PN   R  YAQ+SQI  IRRKMREIM+ +A +CDLK LV KFI E+IG+EI++  +  IYPLQ+ FIRKVKILKAPKFDL KLMEVHGDY+E+VG K+
Sbjct:  141 FTKKRPNHT-RNFYAQSSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241          
The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
RS3A_CHAGB1.114e-3062.2840S ribosomal protein S1 OS=Chaetomium globosum GN... [more]
RS3A_PENMQ2.482e-3059.6540S ribosomal protein S1 OS=Penicillium marneffei ... [more]
RS3A_NECH73.242e-3060.1840S ribosomal protein S1 OS=Nectria haematococca (... [more]
RS3A_PENCW4.234e-3057.8940S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_YARLI5.530e-3057.0240S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_SCLS15.530e-3060.1840S ribosomal protein S1 OS=Sclerotinia sclerotior... [more]
RS3A_NANOT5.530e-3060.5340S ribosomal protein S1 OS=Nannizzia otae (strain... [more]
RS3A_BOTFB5.530e-3060.1840S ribosomal protein S1 OS=Botryotinia fuckeliana... [more]
RS3A_MAGGR9.432e-3060.1840S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]
RS3A_TORRU2.101e-2966.9940S ribosomal protein S3a OS=Tortula ruralis GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bp
CCCCTGAGTTTTTTTTTTTTTTTTATCTAATCCACTGGAATAAAGAATAA
GGTAACCCCTTTTAATACCACAAACCGCTGCAGCCATCTCAAATATCACC
GTAGAATAAAATATGTAAACTCAAAACAAATTTGAGTTCATCACAAACAA
AACTGCCCAAAAATTACTAGATCTGATTGGTTATAAAGACAAACTACAAA
AATTTCTTTATTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGG
CTCATCAGCTGGCCTTTCCATCTTTACACCAACATCCTCAGAGTAATCAC
CATGAACCTCCATCAACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATC
TTCACTTTGCGAATGAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGC
CTTCTCAATCTCTCTTCCAATTATTTCAGCAATGAACTTTTCGACCAAGC
CCTTAAGATCACAGGATGCTGCCTGAGCAATCATGATCTCCCTCATCTTG
CGGCGAATCTGTCTAATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAAC
CTGATTTGGAAGTCTCTTGGTGAATCCA
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