CF835228

Overview
NameCF835228
Unique NameCF835228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:451..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 2.175e-26
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = -2
Query:  236 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----------DVGVKMERP--ADEPIPEA 577
            GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+             D G K+ER    + PI E+
Sbjct:  141 GFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYEPPIQES 266          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3AA_XENLA (40S ribosomal protein S3a-A OS=Xenopus laevis GN=rps3a-A PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 2.840e-26
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = -2
Query:  263 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 577
            GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:  141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVER 252          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.709e-26
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = -2
Query:  245 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV--KMERPADEPI 577
            GFTKR PNQ+K+T YA++SQ R IR+KM ++M  + +  DLK  V K I + IG++IEK   SIYPL +VF+RKVK+LK PKFD+G+LM++HG+ +   G     E P  E +
Sbjct:  140 GFTKRQPNQIKKTSYAKSSQCRSIRKKMVDVMTREVSQIDLKETVNKLIPDSIGKDIEKKCQSIYPLHDVFVRKVKVLKKPKFDIGRLMDLHGESAGGKGATDTFEPPVQESV 252          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.709e-26
Identity = 60/112 (53.57%), Postives = 81/112 (72.32%), Query Frame = -2
Query:  263 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 577
            GFTK+  NQ+++T YAQ  Q+ QIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:  141 GFTKKHNNQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKIPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.844e-26
Identity = 59/118 (50.00%), Postives = 84/118 (71.19%), Query Frame = -2
Query:  248 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKMERPADEP 577
            GFTKR  NQ+K+T YA+ +QI+ IR+KM +I+  + ++ DLK +V K I + IG++IEK+  SIYPL +V IRKVK+LK PKFD+GKLME+HG+ S        ++ G K++R   EP
Sbjct:  140 GFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDREGFEP 257          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.844e-26
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = -2
Query:  263 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 577
            GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V+ RKVK+LK PKF+LGKLME+HG+        +++ G K+ER
Sbjct:  141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMSREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYARKVKMLKKPKFELGKLMELHGEGGGSGKPAADETGAKVER 252          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.844e-26
Identity = 59/114 (51.75%), Postives = 83/114 (72.81%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574
            FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+     + + EA
Sbjct:  142 FTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKVSAGFKDVVLEA 255          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_IXOSC (40S ribosomal protein S3a OS=Ixodes scapularis PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.327e-26
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = -2
Query:  260 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------------DVGVKMERP 577
            GFTK+  NQ+K+TCYAQ +Q+R IR+KM E+M+ + +S +LK +V K I   IG++IEK+   IYPL +V IRKVK+LK PKF+LGKL+E+HG+ +              + GVK++RP
Sbjct:  141 GFTKKCANQLKKTCYAQHNQVRLIRKKMTEMMVVEVSSSNLKDVVNKLIPGSIGKDIEKSCQHIYPLHDVLIRKVKVLKKPKFELGKLLELHGEGTSKGGAASTAAVAKGEEGVKVDRP 259          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.327e-26
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = -2
Query:  269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKM 574
            FT+R+ +QVK TCYAQ SQIRQIR+KM EI+ A+A    L+ LV+KFI E IG+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E+ G K+
Sbjct:  142 FTRRMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.079e-25
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574
            FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  142 FTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
RS3A_DANRE2.175e-2649.2140S ribosomal protein S3a OS=Danio rerio GN=rps3a ... [more]
RS3AA_XENLA2.840e-2652.6840S ribosomal protein S3a-A OS=Xenopus laevis GN=r... [more]
RS3A_SUBDO3.709e-2650.4440S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_CALJA3.709e-2653.5740S ribosomal protein S3a OS=Callithrix jacchus GN... [more]
RS3A_NEMVE4.844e-2650.0040S ribosomal protein S3a OS=Nematostella vectensi... [more]
RS3AB_XENLA4.844e-2652.6840S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]
RS3A2_DEBHA4.844e-2651.7540S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A_IXOSC6.327e-2648.7440S ribosomal protein S3a OS=Ixodes scapularis PE=... [more]
RS3A_CRYHO6.327e-2658.6540S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A_COCP71.079e-2557.8940S ribosomal protein S1 OS=Coccidioides posadasii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bp
CCCCTGAGTTTTTTTTTTTTTTTTATCTAATCCACTGGAATAAAGAATAA
GGTAACCCCTTTTAATACCACAAACCGCTGCAGCCATCTCAAATATCACC
GTAGAATAAAATATGTAAACTCAAAACAAATTTGAGTTCATCACAAACAA
AACTGCCCAAAAATTACTAGATCTGATTGGTTATAAAGACAAACTACAAA
AATTTCTTTATTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGG
CTCATCAGCTGGCCTTTCCATCTTTACACCAACATCCTCAGAGTAATCAC
CATGAACCTCCATCAACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATC
TTCACTTTGCGAATGAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGC
CTTCTCAATCTCTCTTCCAATTATTTCAGCAATGAACTTTTCGACCAAGC
CCTTAAGATCACAGGATGCTGCCTGAGCAATCATGATCTCCCTCATCTTG
CGGCGAATCTGTCTAATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAAC
CTGATTTGGAAGTCTCTTGGTGAATCCA
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