CF835228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.079e-25 Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -2 Query: 236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574 FTKR QVK+T YA++SQIR IR+KM EI+ +A+S L L K + E+IGREIEKAT IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G K+ER E + E+ Sbjct: 142 FTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.079e-25 Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = -2 Query: 269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574 FTKR NQ+++T YAQ+S++R++R+KM EIM + ++C L L K I E+IGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 142 FTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.404e-25 Identity = 58/103 (56.31%), Postives = 79/103 (76.70%), Query Frame = -2 Query: 269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574 FTKR NQ+K+T YAQ+S++R++R+KM EIM + ++ L L K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 142 FTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGALLALHGEGSTEEKGKKV 244
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.404e-25 Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = -2 Query: 269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574 FTKR NQVK+T YAQ+S++R++R+KM EIM + ++ L L K I E+IGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 142 FTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.404e-25 Identity = 55/93 (59.14%), Postives = 73/93 (78.49%), Query Frame = -2 Query: 296 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 574 FTKR NQVK+T YAQ+S++R++R+KM EIM + ++ L L K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ Sbjct: 142 FTKRQANQVKKTTYAQSSKLREVRKKMSEIMQREVSAVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKVLKQPKFDLGALLALHGE 234
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.404e-25 Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = -2 Query: 269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574 FTKR NQVK+T YAQ+S++R++R+KM EIM + ++ L L K I E+IGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 142 FTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_UNCRE (40S ribosomal protein S1 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS1 PE=3 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 3.140e-25 Identity = 64/114 (56.14%), Postives = 83/114 (72.81%), Query Frame = -2 Query: 236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574 FTKR QVK+T YA++SQIR IR+KM EI+ +A++ L L K + E+IGREIEKAT IYPLQNV IRKVK+LK PKFD+G L+ +HG+ S +D G K+ER E + E+ Sbjct: 142 FTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASTRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDIGALLALHGESSTDDKGQKVEREFKEQVLES 254
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.101e-25 Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = -2 Query: 251 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADE 574 FT++ PNQVK+TCYAQ+S IR IR+ EI+ + + L K I E+I +E+E AT I+PLQNV +RKVK+LK PKFDLG LM +HG+ S++ G K+ DE Sbjct: 142 FTRKQPNQVKKTCYAQSSHIRAIRKVFSEILTREVQNSTLAQFTSKLIPEVINKEMENATKDIFPLQNVHVRKVKLLKQPKFDLGSLMALHGEGSDETGKKVSGFKDE 249
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 5.356e-25 Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = -2 Query: 248 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEP 577 GFTK+ PNQ+K+T YA+ SQ R IR+KM +I+ + ++ DLK +V + I + IG++IEK+ SIYPL +V+IRKVK+LK PK D KL+E+HG+ S D G + R EP Sbjct: 140 GFTKKRPNQIKKTAYAKTSQCRSIRKKMTDIITREVSAIDLKEVVNRLIPDSIGKDIEKSCQSIYPLHDVYIRKVKVLKKPKLDTAKLLELHGEGVASSGDAGSAVRRDGYEP 252
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 6.995e-25 Identity = 54/96 (56.25%), Postives = 74/96 (77.08%), Query Frame = -2 Query: 290 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS 577 GFTK+ NQVK+TCYAQ +Q++ IR+KM EI+ + +S D+K +V K I + IG++IEK+ IYPL +V I KVK+LK PKFD+GKLME+HG+ S Sbjct: 141 GFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGS 236 The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 150
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bpback to top |