CF835228

Overview
NameCF835228
Unique NameCF835228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:451..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.079e-25
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574
            FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  142 FTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.079e-25
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = -2
Query:  269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574
            FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  142 FTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.404e-25
Identity = 58/103 (56.31%), Postives = 79/103 (76.70%), Query Frame = -2
Query:  269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574
            FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  142 FTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGALLALHGEGSTEEKGKKV 244          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.404e-25
Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = -2
Query:  269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574
            FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  142 FTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.404e-25
Identity = 55/93 (59.14%), Postives = 73/93 (78.49%), Query Frame = -2
Query:  296 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 574
            FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+
Sbjct:  142 FTKRQANQVKKTTYAQSSKLREVRKKMSEIMQREVSAVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKVLKQPKFDLGALLALHGE 234          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.404e-25
Identity = 59/103 (57.28%), Postives = 78/103 (75.73%), Query Frame = -2
Query:  269 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 574
            FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  142 FTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_UNCRE (40S ribosomal protein S1 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.140e-25
Identity = 64/114 (56.14%), Postives = 83/114 (72.81%), Query Frame = -2
Query:  236 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 574
            FTKR   QVK+T YA++SQIR IR+KM EI+  +A++  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFD+G L+ +HG+ S +D G K+ER   E + E+
Sbjct:  142 FTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASTRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDIGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.101e-25
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = -2
Query:  251 FTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADE 574
            FT++ PNQVK+TCYAQ+S IR IR+   EI+  +  +  L     K I E+I +E+E AT  I+PLQNV +RKVK+LK PKFDLG LM +HG+ S++ G K+    DE
Sbjct:  142 FTRKQPNQVKKTCYAQSSHIRAIRKVFSEILTREVQNSTLAQFTSKLIPEVINKEMENATKDIFPLQNVHVRKVKLLKQPKFDLGSLMALHGEGSDETGKKVSGFKDE 249          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.356e-25
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = -2
Query:  248 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEP 577
            GFTK+ PNQ+K+T YA+ SQ R IR+KM +I+  + ++ DLK +V + I + IG++IEK+  SIYPL +V+IRKVK+LK PK D  KL+E+HG+    S D G  + R   EP
Sbjct:  140 GFTKKRPNQIKKTAYAKTSQCRSIRKKMTDIITREVSAIDLKEVVNRLIPDSIGKDIEKSCQSIYPLHDVYIRKVKVLKKPKLDTAKLLELHGEGVASSGDAGSAVRRDGYEP 252          
BLAST of CF835228 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.995e-25
Identity = 54/96 (56.25%), Postives = 74/96 (77.08%), Query Frame = -2
Query:  290 GFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS 577
            GFTK+  NQVK+TCYAQ +Q++ IR+KM EI+  + +S D+K +V K I + IG++IEK+   IYPL +V I KVK+LK PKFD+GKLME+HG+ S
Sbjct:  141 GFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGS 236          
The following BLAST results are available for this feature:
BLAST of CF835228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
RS3A_COCIM1.079e-2557.8940S ribosomal protein S1 OS=Coccidioides immitis G... [more]
RS3A1_DEBHA1.079e-2555.3440S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A2_PICST2.404e-2556.3140S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A2_CLAL42.404e-2557.2840S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_PICST2.404e-2559.1440S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A1_CLAL42.404e-2557.2840S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_UNCRE3.140e-2556.1440S ribosomal protein S1 OS=Uncinocarpus reesii (s... [more]
RS3A_ZYGRC4.101e-2550.9340S ribosomal protein S1 OS=Zygosaccharomyces roux... [more]
RS3A_TRIAD5.356e-2549.5640S ribosomal protein S3a OS=Trichoplax adhaerens ... [more]
RS3A_APLCA6.995e-2556.2540S ribosomal protein S3a OS=Aplysia californica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835228 ID=CF835228; Name=CF835228; organism=Citrus sinensis; type=EST; length=578bp
CCCCTGAGTTTTTTTTTTTTTTTTATCTAATCCACTGGAATAAAGAATAA
GGTAACCCCTTTTAATACCACAAACCGCTGCAGCCATCTCAAATATCACC
GTAGAATAAAATATGTAAACTCAAAACAAATTTGAGTTCATCACAAACAA
AACTGCCCAAAAATTACTAGATCTGATTGGTTATAAAGACAAACTACAAA
AATTTCTTTATTCAAGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGG
CTCATCAGCTGGCCTTTCCATCTTTACACCAACATCCTCAGAGTAATCAC
CATGAACCTCCATCAACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATC
TTCACTTTGCGAATGAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGC
CTTCTCAATCTCTCTTCCAATTATTTCAGCAATGAACTTTTCGACCAAGC
CCTTAAGATCACAGGATGCTGCCTGAGCAATCATGATCTCCCTCATCTTG
CGGCGAATCTGTCTAATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAAC
CTGATTTGGAAGTCTCTTGGTGAATCCA
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