CF835234

Overview
NameCF835234
Unique NameCF835234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP----------------------RRFNPYMGYRGRRPYVPPY 273
            E++ +F  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+                           R     MGYRGR  Y  PY
Sbjct:  111 ELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.362e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 249
            E++ +F  CG V+RVTIL DKF G PKG+AY+EF    +VQ A++L++S   GR +KVLPKRTN PG+          + G RG
Sbjct:  162 ELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.256e-14
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 201
            E++ YF  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+ES   GR +KVLPKRTN PG+
Sbjct:  158 ELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK--------QYRPR---------------RFNPYMGYRGRRPYVPPY 273
            E++ +F  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+          +R R                     GYRGR  Y  PY
Sbjct:  111 ELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYAPY 225          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 252
            ++  YFQSCGTVNR+TIL+DK  G PKG  YVEF+  +++  A+ LN+S  + RQLK+ PKRTN+P  M+Q   P     + G RGR
Sbjct:  116 QILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202          
BLAST of CF835234 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11
Identity = 43/117 (36.75%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 EVQHYFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY--FYSP---YGYGK 300
            +++ +F+ CG + R+T+L D+  G PKG+ Y+EF      ++ALQLN  EL G+++ V  KRTN+PG  +        ++  ++N P M Y      PY PPY    SP   +GY K
Sbjct:   79 QIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPYPPNQSPNQNFGYNK 195          
The following BLAST results are available for this feature:
BLAST of CF835234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PABP2_DROME5.637e-1541.23Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
EPAB2_HUMAN7.362e-1548.81Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
EPAB2_MOUSE1.256e-1455.88Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]
PABP2_DROPS2.142e-1440.87Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
PABP2_DICDI2.142e-1450.57Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]
SGN1_YEAST1.299e-1136.75RNA-binding protein SGN1 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835234 ID=CF835234; Name=CF835234; organism=Citrus sinensis; type=EST; length=535bp
GAAGTGCAGCATTATTTCCAATCCTGTGGTACTGTAAACAGGGTAACTAT
TCTGACAGACAAGTTTGGCCAGCCAAAGGGTTTTGCTTATGTGGAATTCC
TTGAAATAGATGCTGTTCAAGAGGCTCTCCAGTTGAATGAGTCTGAATTA
CATGGCCGTCAACTGAAGGTTTTACCTAAGAGGACAAATGTCCCTGGTAT
GAAGCAGTATCGTCCAAGGCGTTTCAATCCTTACATGGGGTACCGAGGCA
GGAGGCCCTATGTACCTCCTTATTTCTATTCACCTTATGGATATGGGAAG
GTTCCGAGGTTCAGAAGGCCAATGAGGTACATGCCCTACTACTAGCAGAT
TGTGCTCCTGTTGAAGATGGTGACATTTGTGGATCATCCATAAACTGAAA
AATTCAATGTATCATGGTGCTTATGTATCCTGCTTTAGATAGGAAACAAA
GGATTTATTAGCTACATGTTTATTATTGATGTCTTGAATGATCAAACATT
ATTAGCATGAACTTTATGGAAAAAAAAAAAAAAAA
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