CF835243

Overview
NameCF835243
Unique NameCF835243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6351 contig Csv1_Contig6351:133..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO1_PONAB (Small ubiquitin-related modifier 1 OS=Pongo abelii GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.752e-14
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            +I LKV GQD +E  F +K  T LKKL  +YC  Q V +NSL FLF+G+R+  + TP EL ME+ D I+    QTGG
Sbjct:   21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO1_PIG (Small ubiquitin-related modifier 1 OS=Sus scrofa GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.752e-14
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            +I LKV GQD +E  F +K  T LKKL  +YC  Q V +NSL FLF+G+R+  + TP EL ME+ D I+    QTGG
Sbjct:   21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO1_MOUSE (Small ubiquitin-related modifier 1 OS=Mus musculus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.752e-14
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            +I LKV GQD +E  F +K  T LKKL  +YC  Q V +NSL FLF+G+R+  + TP EL ME+ D I+    QTGG
Sbjct:   21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO1_HUMAN (Small ubiquitin-related modifier 1 OS=Homo sapiens GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.752e-14
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            +I LKV GQD +E  F +K  T LKKL  +YC  Q V +NSL FLF+G+R+  + TP EL ME+ D I+    QTGG
Sbjct:   21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO1_CHICK (Small ubiquitin-related modifier 1 OS=Gallus gallus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.752e-14
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            +I LKV GQD +E  F +K  T LKKL  +YC  Q V +NSL FLF+G+R+  + TP EL ME+ D I+    QTGG
Sbjct:   21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRITDNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO1_BOVIN (Small ubiquitin-related modifier 1 OS=Bos taurus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.752e-14
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            +I LKV GQD +E  F +K  T LKKL  +YC  Q V +NSL FLF+G+R+  + TP EL ME+ D I+    QTGG
Sbjct:   21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SMO1A_XENLA (Small ubiquitin-related modifier 1-A OS=Xenopus laevis GN=sumo1-A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.752e-14
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            +I LKV GQD +E  F +K  T LKKL  +Y   Q V +NSL FLF+G+R+  HQTP EL ME+ D I+    QTGG
Sbjct:   22 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYRQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO1_CERNI (Small ubiquitin-related modifier 1 OS=Cervus nippon GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.206e-14
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            +I LKV GQD +E  F +K  T LKKL  +YC  Q V +NSL FLF+G+R+  + TP EL ME+ D I+    QTGG
Sbjct:   21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYHEQTGG 97          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 2
Query:   59 NQAHINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            N  +I +KV GQD NE  F +K  T + KL  +Y D   V +NSL FLFDGRR+    TP  LEMED D I+    Q GG
Sbjct:   11 NAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.254e-13
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 2
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            +I LKV GQD +E  F +K  T LKKL  +Y   Q V +NSL FLF+G+R+  + TP EL MED D I+    QTGG
Sbjct:   20 YIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIEVYQEQTGG 96          
The following BLAST results are available for this feature:
BLAST of CF835243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_PONAB4.752e-1450.65Small ubiquitin-related modifier 1 OS=Pongo abelii... [more]
SUMO1_PIG4.752e-1450.65Small ubiquitin-related modifier 1 OS=Sus scrofa G... [more]
SUMO1_MOUSE4.752e-1450.65Small ubiquitin-related modifier 1 OS=Mus musculus... [more]
SUMO1_HUMAN4.752e-1450.65Small ubiquitin-related modifier 1 OS=Homo sapiens... [more]
SUMO1_CHICK4.752e-1450.65Small ubiquitin-related modifier 1 OS=Gallus gallu... [more]
SUMO1_BOVIN4.752e-1450.65Small ubiquitin-related modifier 1 OS=Bos taurus G... [more]
SMO1A_XENLA4.752e-1451.95Small ubiquitin-related modifier 1-A OS=Xenopus la... [more]
SUMO1_CERNI6.206e-1450.65Small ubiquitin-related modifier 1 OS=Cervus nippo... [more]
SUMO_CAEEL1.383e-1348.75Small ubiquitin-related modifier OS=Caenorhabditis... [more]
SUMO1_DANRE5.254e-1350.65Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835243 ID=CF835243; Name=CF835243; organism=Citrus sinensis; type=EST; length=539bp
CAGATACTGTTCGGCGTCACGAACACTCCTCAAGAGGAAGATAAAAAGCC
CAACGATCAATCAGGCTCACATCAATCTCAAAGTCAAGGGCCAGGATGGG
AATGAGGGGGTCTTCGGGATCAAACGACCCACCCAACTAAAGAAGCTTAT
GAATGCGTACTGTGATATACAATCTGTGGAGCTGAACTCCCTTGCCTTCT
TGTTTGATGGTCGCCGTCTTCGAGGACACCAAACCCCTGATGAGCTGGAA
ATGGAAGATGGTGATGAGATTGATGCCCTGCTGCACCAAACCGGAGGAAT
GCTGATGGTCTAATTATGTACTACTCGTTTGAGAGCTTATTAGTAGTATT
ATTGTAAAACTATCAATGGATGGATGCAAGTTATGCAGAGGCTCAAGATT
GCGTATTTGTGATCTACACCATTATGTTTGTGTTACCTAAGTATGTACCT
CTTTCTTCCAGAGCCCTGATCGTTGCTGTTTATATCCAGCTAGAATTGGG
ATATATCTGTGATGATTGGATCAAAGCCAAAAAAAAAAA
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