CF835243

Overview
NameCF835243
Unique NameCF835243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6351 contig Csv1_Contig6351:133..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SMT3_YEAST (Ubiquitin-like protein SMT3 OS=Saccharomyces cerevisiae GN=SMT3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.862e-13
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 2 
Query:   32 KRKIKSPTINQAHINLKVKGQDGNEGVF-GIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGG 298
            K ++K     + HINLKV   DG+  +F  IK+ T L++LM A+   Q  E++SL FL+DG R++  QTP++L+MED D I+A   Q GG
Sbjct:   11 KPEVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 98
[Close]
BLAST of CF835243 vs. ExPASy Swiss-Prot
Match: SUMO1_ONCMY (Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 2 
Query:   68 HINLKVKGQDGNEGVFGIKRPTQLKKLMNAYCDIQSVELNSLAFLFDGRRLRGHQTPDELEMEDGDEIDALLHQTGGM 301
            +I LKV GQD +E  F +K  T LKKL  +Y   Q V +++L FLF+G+R+  + TP EL MED D I+    QTGG+
Sbjct:   21 YIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIEVYQEQTGGL 98
The following BLAST results are available for this feature:
BLAST of CF835243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_YEAST6.862e-1344.44Ubiquitin-like protein SMT3 OS=Saccharomyces cerev... [more]
SUMO1_ONCMY8.962e-1347.44Small ubiquitin-related modifier 1 OS=Oncorhynchus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835243 ID=CF835243; Name=CF835243; organism=Citrus sinensis; type=EST; length=539bp
CAGATACTGTTCGGCGTCACGAACACTCCTCAAGAGGAAGATAAAAAGCC
CAACGATCAATCAGGCTCACATCAATCTCAAAGTCAAGGGCCAGGATGGG
AATGAGGGGGTCTTCGGGATCAAACGACCCACCCAACTAAAGAAGCTTAT
GAATGCGTACTGTGATATACAATCTGTGGAGCTGAACTCCCTTGCCTTCT
TGTTTGATGGTCGCCGTCTTCGAGGACACCAAACCCCTGATGAGCTGGAA
ATGGAAGATGGTGATGAGATTGATGCCCTGCTGCACCAAACCGGAGGAAT
GCTGATGGTCTAATTATGTACTACTCGTTTGAGAGCTTATTAGTAGTATT
ATTGTAAAACTATCAATGGATGGATGCAAGTTATGCAGAGGCTCAAGATT
GCGTATTTGTGATCTACACCATTATGTTTGTGTTACCTAAGTATGTACCT
CTTTCTTCCAGAGCCCTGATCGTTGCTGTTTATATCCAGCTAGAATTGGG
ATATATCTGTGATGATTGGATCAAAGCCAAAAAAAAAAA
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