CF835244

Overview
NameCF835244
Unique NameCF835244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.620e-35
Identity = 72/137 (52.55%), Postives = 100/137 (72.99%), Query Frame = -2
Query:  284 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   20 FKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC2_PIG (Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.620e-35
Identity = 72/137 (52.55%), Postives = 100/137 (72.99%), Query Frame = -2
Query:  284 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   19 FKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNMDGYIDAEELAEIFRASGEHVTDEEIESIMKDGDKNNDGRIDFDEFLKMM 155          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.620e-35
Identity = 73/137 (53.28%), Postives = 101/137 (73.72%), Query Frame = -2
Query:  284 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +FD DG G I+TKELGTVMR LGQNPT  EL  +I EVD DG+GTIDF EFL +M R++K+     SEEEL E FRVFDK+ +GFI   E   ++ + GE +++EE+DE++ + D + DG+I+++E++K+M
Sbjct:   20 FKAAFDMFDTDGGGDISTKELGTVMRMLGQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGKSEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGDKNNDGKIDFDEWLKMM 156          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR_TETST (Caltractin (Fragment) OS=Tetraselmis striata PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 72/133 (54.14%), Postives = 93/133 (69.92%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +EAF LFD DG G I  KEL   MR+LG  P + E++ MI ++D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:   10 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 142          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 72/133 (54.14%), Postives = 93/133 (69.92%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +EAF LFD DG G I  KEL   MR+LG  P + E++ MI ++D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:   30 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 162          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC2_MOUSE (Troponin C, skeletal muscle OS=Mus musculus GN=Tnnc2 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.713e-35
Identity = 71/137 (51.82%), Postives = 100/137 (72.99%), Query Frame = -2
Query:  284 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +T+EE++ ++++ D + DG+I+++EF+K+M
Sbjct:   20 FKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTEEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC2_HUMAN (Troponin C, skeletal muscle OS=Homo sapiens GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.155e-35
Identity = 71/137 (51.82%), Postives = 99/137 (72.26%), Query Frame = -2
Query:  284 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I   EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   20 FKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
The following BLAST results are available for this feature:
BLAST of CF835244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
TNNC2_RABIT1.620e-3552.55Troponin C, skeletal muscle OS=Oryctolagus cunicul... [more]
TNNC2_PIG1.620e-3552.55Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2... [more]
TNNC2_ANGAN1.620e-3553.28Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
CATR_TETST2.115e-3554.14Caltractin (Fragment) OS=Tetraselmis striata PE=2 ... [more]
CATR_SCHDU2.115e-3554.14Caltractin OS=Scherffelia dubia PE=2 SV=1[more]
TNNC2_MOUSE4.713e-3551.82Troponin C, skeletal muscle OS=Mus musculus GN=Tnn... [more]
TNNC2_HUMAN6.155e-3551.82Troponin C, skeletal muscle OS=Homo sapiens GN=TNN... [more]
TNNC1_PIG3.055e-3451.45Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE3.055e-3451.45Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN3.055e-3451.45Troponin C, slow skeletal and cardiac muscles OS=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835244 ID=CF835244; Name=CF835244; organism=Citrus sinensis; type=EST; length=686bp
TTTTTTTTTTTTTTTTTAGAAATAGGGCAGATCAACGAGTCACTCTTTTA
ACAGAAACAATGTTCACAGAAGAGCGGAAAAAAACTAAAACATTAAAAAA
CTGAAAAGTTGCTCCAGTCACAAGACAAATTGAAGCAGGAGACAACATGC
TTCCTTTAGCTTGACCTCAGAGTTATCAAATTAAAATTTATAAAAAAGGA
AACTAGGGAACCAATTATATTAATCAACCAATTTCTTCTTTTCCCAGGAA
GTTTTGGTTGGGTGGAGTCACTTACTTAGCCATCATAACCTTGACAAATT
CCTCGTAATTTATCTGGCCATCACCATCGACATCAGCTTCCCTTATCATC
TCATCGACTTCCTCATCAGTAAGCTTCTCCCCTAGGTTTGTCATCACATG
GCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCC
GGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCCTG
GCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTACCATCAGC
ATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGGTTCTGAC
CCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTAATGCAACCGTCG
CCGTCCTTGTCGAACAAGCTGAAGGCTTCTTTGAAC
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