CF835245

Overview
NameCF835245
Unique NameCF835245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSJ (Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CAM2 PE=2 SV=3)

HSP 1 Score: 291.582 bits (745), Expect = 2.902e-78
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MAD LTD+QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA+KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    1 MADQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSI (Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.902e-78
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MAD LTD+QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA+KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    1 MADQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM_WHEAT (Calmodulin OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 290.812 bits (743), Expect = 4.950e-78
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MAD LTD+QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQ+GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    1 MADQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQDGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 290.812 bits (743), Expect = 4.950e-78
Identity = 144/149 (96.64%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MAD LTD+QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA+KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEV+EMIREADVDGDGQINYEEFVK+MMAK
Sbjct:    1 MADQLTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEEFVKIMMAK 149
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 6.465e-78
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MA+ LTD+QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    1 MAZZLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM_MAIZE (Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 6.465e-78
Identity = 145/149 (97.32%), Postives = 147/149 (98.66%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MAD LTD+QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE LNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    1 MADQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPELLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM_FAGSY (Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3)

HSP 1 Score: 286.96 bits (733), Expect = 7.148e-77
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MAD LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVD DGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD EVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDRDGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD-EVDEMIREADVDGDGQINYEEFVKVMMAK 148
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM_MOUSC (Calmodulin OS=Mougeotia scalaris PE=2 SV=3)

HSP 1 Score: 280.026 bits (715), Expect = 8.738e-75
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MAD LT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF+VFDKDQNG+ISAA+ RHVMTNLGEKLTDEEVDEMIREADVDGDGQ+NYEEFVK+MMAK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADWRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVKMMMAK 149
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM_SOLLC (Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.490e-74
Identity = 136/149 (91.28%), Postives = 147/149 (98.66%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MA+ LT++QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMI+EVDAD NGTIDFPEFLNLMARKMKDTDSEEELKEAF+VFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M+AK
Sbjct:    1 MAEQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLAK 149
[Close]
BLAST of CF835245 vs. ExPASy Swiss-Prot
Match: CALM1_SOLTU (Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 4.337e-74
Identity = 135/149 (90.60%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:    5 MADLLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 451
            MA+ LT++QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMI+E DAD NGTIDFPEFLNLMARKMKDTDSEEELKEAF+VFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M+AK
Sbjct:    1 MAEQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEADADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLAK 149
The following BLAST results are available for this feature:
BLAST of CF835245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
CALM2_ORYSJ2.902e-7897.32Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM2_ORYSI2.902e-7897.32Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2... [more]
CALM_WHEAT4.950e-7897.32Calmodulin OS=Triticum aestivum PE=1 SV=3[more]
CALM1_ARATH4.950e-7896.64Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=... [more]
CALM_SPIOL6.465e-7897.32Calmodulin OS=Spinacia oleracea PE=1 SV=2[more]
CALM_MAIZE6.465e-7897.32Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2[more]
CALM_FAGSY7.148e-7797.99Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3[more]
CALM_MOUSC8.738e-7592.62Calmodulin OS=Mougeotia scalaris PE=2 SV=3[more]
CALM_SOLLC1.490e-7491.28Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 S... [more]
CALM1_SOLTU4.337e-7490.60Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06O12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835245 ID=CF835245; Name=CF835245; organism=Citrus sinensis; type=EST; length=725bp
GAAAATGGCGGATCTGCTCACCGACGATCAGATCTCCGAGTTCAAAGAAG
CCTTCAGCTTGTTCGACAAGGACGGCGACGGTTGCATTACCACCAAGGAG
CTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCT
CCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTATTGATT
TTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCT
GAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGG
TTTCATCTCAGCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGA
AGCTTACTGATGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGAT
GGTGATGGCCAGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAA
GTAAGTGACTCCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTT
GATTAATATAATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGA
TAACTCTGAGGTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTG
TCTTGTGACTGGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCC
GCTCTTCTGTGAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCC
CTATTTCTTAAAAAAAAAAAAAAAA
back to top