CF835248

Overview
NameCF835248
Unique NameCF835248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig272 contig Csv1_Contig272:2..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDE 203
            +KDL++   VS A QAG VW+NC     +Q+P GG K SG GRE+GE+G+  Y  VK VT  +S++
Sbjct:  434 TKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTMKISEK 499          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDE 203
            +KDL++   VS A QAG VW+NC     +Q+P GG K SG GRE+GE+G+  Y  VK VT  +S++
Sbjct:  434 TKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTMKISEK 499          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVT 185
            +KDL++ + +S+A QAG VWINC     +Q+P+GG K SG GRELGE+GL  Y  VK VT
Sbjct:  452 TKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 511          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVT 185
            +KDL++ + +S+A QAG VWINC     +Q+P+GG K SG GRELGE+GL  Y  VK VT
Sbjct:  452 TKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 511          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVT 185
            +KDL++ + +S+A QAG VWINC     +Q+P+GG K SG GRELGE+GL  Y  VK VT
Sbjct:  433 TKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 492          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVT 185
            +KDL++ + +S+A QAG VW+NC     +Q+P+GG K SG GRELGE+GL  Y  VK VT
Sbjct:  450 TKDLDKANYLSQALQAGTVWVNCYNVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 509          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVT 185
            +KDL++ + +S+A QAG VW+NC     +Q+P+GG K SG GRELGE+GL  Y  VK VT
Sbjct:  450 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVT 509          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVT 185
            +KDL++ + +S+A QAG VWINC     +Q+P+GG K SG GRELGE+GL  Y  VK VT
Sbjct:  433 TKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGNGRELGEYGLQAYTEVKTVT 492          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVT 185
            +KDL++ + +S+A QAG VW+NC     +Q+P+GG K SG GRELGE+GL  Y  VK VT
Sbjct:  454 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTVT 513          
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 3
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVS 197
            +KDL++   VS A QAG VW+NC      Q P+GG K SG GRELGE+GL  Y  VK VT  +S
Sbjct:  173 TKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLHEYTEVKTVTMKIS 236          
The following BLAST results are available for this feature:
BLAST of CF835248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ALDH1_MACPR1.243e-1148.48Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
ALDH1_ELEED1.243e-1148.48Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
ALDH2_RAT1.623e-1155.00Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
ALDH2_MOUSE1.623e-1155.00Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]
ALDH2_MESAU1.623e-1155.00Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_PONAB2.120e-1153.33Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH2_HUMAN2.120e-1153.33Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
ALDH2_HORSE2.120e-1155.00Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
ALDH2_PIG2.769e-1153.33Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
ALDH2_MACPR2.769e-1153.13Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835248 ID=CF835248; Name=CF835248; organism=Citrus sinensis; type=EST; length=529bp
TGATATCCAAGGATTTGGAAAGGTGTGATCGTGTAAGCAAGGCTTACCAA
GCAGGCATTGTATGGATCAACTGCTCACAGCCATGCTTCTCTCAAGCTCC
ATGGGGGGGCAAAAAACATAGTGGTTTTGGCCGTGAATTAGGGGAATGGG
GACTTGATAATTACTTGAGCGTGAAGCAGGTCACTCAGTATGTCTCAGAT
GAGCCATGGGGATGGTACAAGTCTCCTTCAAAGCTGTGAAATGAAAATGA
GAAATTGCGGATGAAGCAAAACACAGATAGTAATGTGAGAGACGTACTGT
ACTGAAGCTATGTGCTAAGACTATGCAATAATAATAAGTAATGTAAAATG
ACAGAAACACTTCAGAATAGTTTATTCCCTTAGCCATGTTGTATTTCCCT
TGTGGGATATCTTCGGCTTCCATTGGTTGTAAAACCATATTCCCAGACAC
TCTTGGAGTTTAATCATGGTTTCAGGCTCTTTAGCCTGCAATTAGATTCT
TAGTTCTCGTCNNAAAAAAAAAAAAAAAA
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