CF835248

Overview
NameCF835248
Unique NameCF835248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig272 contig Csv1_Contig272:2..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVT 185
            +KDL++ + +S+A QAG VW+NC     +Q+P+GG K SG GRELGE+GL  Y  VK VT
Sbjct:  453 TKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTVT 512
[Close]
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 3 
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDE 203
            +KDL+R   VS A QAG+VW+NC     +Q P+GG K SG GRELGE GL  Y  +K V   +S +
Sbjct:  434 TKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKISQK 499
[Close]
BLAST of CF835248 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 3 
Query:    6 SKDLERCDRVSKAYQAGIVWINCSQPCFSQAPWGGKKHSGFGRELGEWGLDNYLSVKQVTQYVSDE 203
            +KDL++   VS A QAG+VW+NC     +Q P+GG K SG GRELGE GL  Y  +K V   +S +
Sbjct:  434 TKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKISQK 499
The following BLAST results are available for this feature:
BLAST of CF835248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ALDH2_BOVIN2.769e-1153.33Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
AL1A1_RAT4.723e-1150.00Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_MOUSE8.057e-1148.48Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835248 ID=CF835248; Name=CF835248; organism=Citrus sinensis; type=EST; length=529bp
TGATATCCAAGGATTTGGAAAGGTGTGATCGTGTAAGCAAGGCTTACCAA
GCAGGCATTGTATGGATCAACTGCTCACAGCCATGCTTCTCTCAAGCTCC
ATGGGGGGGCAAAAAACATAGTGGTTTTGGCCGTGAATTAGGGGAATGGG
GACTTGATAATTACTTGAGCGTGAAGCAGGTCACTCAGTATGTCTCAGAT
GAGCCATGGGGATGGTACAAGTCTCCTTCAAAGCTGTGAAATGAAAATGA
GAAATTGCGGATGAAGCAAAACACAGATAGTAATGTGAGAGACGTACTGT
ACTGAAGCTATGTGCTAAGACTATGCAATAATAATAAGTAATGTAAAATG
ACAGAAACACTTCAGAATAGTTTATTCCCTTAGCCATGTTGTATTTCCCT
TGTGGGATATCTTCGGCTTCCATTGGTTGTAAAACCATATTCCCAGACAC
TCTTGGAGTTTAATCATGGTTTCAGGCTCTTTAGCCTGCAATTAGATTCT
TAGTTCTCGTCNNAAAAAAAAAAAAAAAA
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