CF835252

Overview
NameCF835252
Unique NameCF835252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = -3
Query:  255 VMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQLS 710
            + +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+FHRV+  FM Q           GESIYG  F DENF+ KH    +LSMAN G  TNGSQFF+ T     LDG HVVFG V+ G +V++ IE + + ++ R    V + DCG L+
Sbjct:   24 MFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 177          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = -3
Query:  255 VMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQLS 710
            + +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+FHRV+  FM Q           GESIYG  F DENF+ KH    +LSMAN G  TNGSQFF+ T     LDG HVVFG V+ G +V++ IE + + ++ R    V + DCG L+
Sbjct:   24 MFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 177          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 79/152 (51.97%), Postives = 95/152 (62.50%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 710
            V+ LF +V P+T +NF  L    +G G       Y GS FHRVI  FM Q           G SIYG +F DENF  +H GPG LSMANAG  TNGSQFF+ TAKT WLDGKHVVFG+++EGMDVV+ IE     +G R  + VVIA+ G +
Sbjct:   43 VIGLFGEVVPKTVKNFVELAQRAEGEG-------YVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.047e-33
Identity = 79/153 (51.63%), Postives = 92/153 (60.13%), Query Frame = -3
Query:  255 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQLS 710
            V+ LF    P+TA NF  L    KG G       Y GS FHRVI  FM Q           G SIYG KFADENF  KH G G LSMANAG  TNGSQFF+ T KT WLDG+HVVFG+++EGMDVV+ IE+     G R  + V+IA  G ++
Sbjct:   46 VIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 191          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 75/130 (57.69%), Postives = 83/130 (63.85%), Query Frame = -3
Query:  321 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 710
            V+ LF  V P+T ENF AL TGEKG G       YKGS FHRVI  FM Q           G SIYG  F DENF  KH G G +SMANAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +IE
Sbjct:   55 VIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIE 177          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 75/130 (57.69%), Postives = 84/130 (64.62%), Query Frame = -3
Query:  321 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 710
            V+ LF +V P+T ENF AL TGEKG G       YKGS FHRVI  FM Q           G SIYG  F DENF  KH G G +SMANAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +IE
Sbjct:   55 VIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 75/130 (57.69%), Postives = 83/130 (63.85%), Query Frame = -3
Query:  321 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 710
            V+ LF  V P+T ENF AL TGEKG G       YKGS FHRVI  FM Q           G SIYG  F DENF  KH G G +SMANAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +IE
Sbjct:   55 VIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIKDFMIQGGDFTRGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 77/154 (50.00%), Postives = 94/154 (61.04%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVV---IADCGQL 710
            V  L+    PRT ENFRA CTGE G   +G    Y+GS FHRVI GFM Q           G SIYG  F DEN   KH  P +LSMAN GP TNGSQFF+ + +   LDGKH VFG+V++G++VVKAIE +   +G  +KPV    I  CG++
Sbjct:   26 VFSLWNHCCPRTVENFRAFCTGELG-KMNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTGGYSIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENL--ETGNEDKPVCKVEITHCGEM 176          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.416e-31
Identity = 78/152 (51.32%), Postives = 93/152 (61.18%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV-EGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 710
            V+EL  DV P+T +NF         IG   K   YKGS+FHRVI  FM Q           G SIYG +F DENF  KH   G++SMANAGP TNGSQFF+ T KTEWLDG+HVVFG++  +    V+AIE +GSS GR +K   I D G L
Sbjct:   40 VLELRGDVVPKTVKNF---------IGLFDK---YKGSTFHRVIADFMIQGGDFENHNGTGGHSIYGPRFEDENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGRPSKIAKITDIGLL 178          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.327e-30
Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = -3
Query:  258 MELFADVTPRTAENFRALCTGEKGIGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 707
            + LF +  P+T ENFRALCTGE G+  + K  LHYK + FHR++  FM Q           G SIYG  F DE F  KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVFG+VV+G +VV  I+ +      +    V+I++CG+L
Sbjct:   23 IRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
The following BLAST results are available for this feature:
BLAST of CF835252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
NKTR_MOUSE9.506e-3448.70NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN9.506e-3448.70NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]
CYP6_CAEEL9.506e-3451.97Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
CYP5_CAEEL8.047e-3351.63Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPIC_HUMAN1.793e-3257.69Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PPIC_MOUSE3.058e-3257.69Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIC_BOVIN3.994e-3257.69Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
CYP8_CAEEL8.897e-3250.00Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
PPIA_NEOCA4.416e-3151.32Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
CYP9_CAEEL8.327e-3046.05Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835252 ID=CF835252; Name=CF835252; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTATAACAGACAAGCCCTATCTTATTTAAAAAGGC
TTCTCATAGAAAGACATAAAAAACAGTTCATCAGGAACCACCACCGGAGA
CCCGATCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAGATTA
AAAGTCCTACAGACACGGCCACATAATAATAGATAACATAATCACCATCA
CGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGATCAAA
TCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGTCCTT
CCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTCCTTC
GACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTCTTGG
CCGTACAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCC
ATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGC
GAATTTTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGA
AGTCTCCCCCCTGGCACATGAATCCGGGGATCACACGGTGGAAGGACGAG
CCCTTGTAGTGGAGTGGCTTGCCGGACTTGCCGATGCCTTTCTCGCCGGT
GCAGAGGGCGCGGAAGTTCTCGGCGGTTCGGGGGGTGACATCGGCGAAGA
GCTCCATCACGA
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