CF835252

Overview
NameCF835252
Unique NameCF835252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_MYCBO (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium bovis GN=ppiA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 63/151 (41.72%), Postives = 79/151 (52.32%), Query Frame = -3
Query:  276 LFADVTPRTAENFRALCTGEKGIGK---SGKPL--HYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGS-SSGRTNKPVVI 701
            LF +  P+T  NF  L  G K       SG P    Y G+ FHRVI GFM Q                G KFADE   + +   P +L+MANAGPGTNGSQFF+   KT  L+ +H +FG+V+  E   VV+AI K  +  + R   PVVI
Sbjct:   30 LFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 176          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 55/145 (37.93%), Postives = 76/145 (52.41%), Query Frame = -3
Query:  279 MELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVV 707
            +ELFA   P+  ENF   C+            +Y  + FHR+I  FM Q            ESI+   F+DE F+    H   G+LSMAN G  TNGSQFF+     ++LD KH +FG++V G D +  IEK+ +  G T+ P+V
Sbjct:  293 LELFAPKVPKACENFITHCSNG----------YYNNTKFHRLIKNFMLQGGDPTGTGHGG-ESIWDKPFSDE-FISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEG-TDVPMV 424          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP10_CAEEL (Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorhabditis elegans GN=cyn-10 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = -3
Query:  315 MELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 707
            +EL+ D  P+  ENF ALC  +          +Y G  FHR I  FM Q            ESI+G  F DE FV   KH   G +SMAN GP +N SQFF+  AK   LD K+ +FG+V++G D ++ IE +
Sbjct:   14 IELYVDDAPKACENFLALCASD----------YYNGCIFHRNIKDFMVQTGDPTHSGKGG-ESIWGGPFEDE-FVSALKHDSRGCVSMANNGPDSNRSQFFITYAKQAHLDMKYTLFGKVIDGFDTLEEIETI 134          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIL3_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Neurospora crassa GN=cyp-10 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 54/124 (43.55%), Postives = 67/124 (54.03%), Query Frame = -3
Query:  351 MELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXG----ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV 707
            +E+F +  P+TAENF ALC        SG   +Y  S FHR+IP FM Q                 SIYG  F DE   V +H   GI+SMAN GP TNGSQFF+   K   LDG + VFG+++
Sbjct:   14 IEIFCESVPKTAENFLALCA-------SG---YYNASPFHRMIPSFMVQTGAPANPSPPENPKGGRSIYGPTFEDEIRPVLRHNERGIVSMANKGPNTNGSQFFILFDKAPHLDGLNTVFGKLI 127          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPI1_STAES (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0648 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 63/169 (37.28%), Postives = 78/169 (46.15%), Query Frame = -3
Query:  282 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAK----------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 704
            +LF D+ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYGS F DE  ++     G LSMANAGP TNGSQFF+   K                            T WLD KH VFGQ++EG   ++ I    +  G  +KPV
Sbjct:   30 KLFPDIAPKTVENFVTH-------SKNG---YYDGVTFHRVINDFMVQGGDPTATGMGG-ESIYGSAFEDEFSLEAFNLYGALSMANAGPNTNGSQFFIVQMKEVPENMLSQLADGGWPQPIVEAYGEKGGTPWLDQKHTVFGQLIEGESTLEDI--ANTKVGAQDKPV 185          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPI1_STAEQ (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0540 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 63/169 (37.28%), Postives = 78/169 (46.15%), Query Frame = -3
Query:  282 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAK----------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 704
            +LF D+ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYGS F DE  ++     G LSMANAGP TNGSQFF+   K                            T WLD KH VFGQ++EG   ++ I    +  G  +KPV
Sbjct:   30 KLFPDIAPKTVENFVTH-------SKNG---YYDGVTFHRVINDFMVQGGDPTATGMGG-ESIYGSAFEDEFSLEAFNLYGALSMANAGPNTNGSQFFIVQMKEVPENMLSQLADGGWPQPIVEAYGEKGGTPWLDQKHTVFGQLIEGESTLEDI--ANTKVGAQDKPV 185          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = -3
Query:  315 MELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 707
            +E+F D  P  +ENF ALC             +Y  + FHR I GFM Q            ESI+  +F DE F    KH   GILSMAN+GP TNGSQFF+   K   L+  + VFG+++ G++V+  +EKV
Sbjct:   14 VEIFCDSVPLASENFLALCASN----------YYNNTIFHRNIKGFMIQGGDPTNTGRGG-ESIWKKQFKDE-FPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLMEKV 134          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPI1_STAHJ (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1997 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 63/169 (37.28%), Postives = 77/169 (45.56%), Query Frame = -3
Query:  282 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAK----------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 704
            +LF D+ P+T ENF           K+G   +Y G +FHRVI  FM Q            ESIYG  F DE  ++     G LSMANAGP TNGSQFFV   K                            T WLD KH VFGQ++EG   ++ I    +  G  +KPV
Sbjct:   30 KLFPDIAPKTVENFVTHA-------KNG---YYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGSFEDEFSLEAFNLYGALSMANAGPNTNGSQFFVVQMKEVPESMVNQLVDGGWPEPIAKAYADNGGTPWLDQKHTVFGQLIEGEATLEDI--ANTKVGAQDKPV 185          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 54/141 (38.30%), Postives = 72/141 (51.06%), Query Frame = -3
Query:  288 MELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 707
            ++L+ +  P+  +NF      E G        +Y  + FHR+I  FM Q            ESI+   F DE     KH  P  +SMAN+GP TNGSQFF+ T  T WLDGKH +F +   G+DVV  IE+     G T+K
Sbjct:  468 IKLYPEEAPKAVQNFTT--HAENG--------YYDNTIFHRIIKNFMIQGGDPLGDGTGG-ESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIEQ-----GETDK 592          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIL2_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizosaccharomyces pombe GN=cyp8 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 57/149 (38.26%), Postives = 76/149 (51.01%), Query Frame = -3
Query:  270 MELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIAD 707
            +EL  D  P    NF  L           K  +Y+ + FHR I  FM Q            +SI+G  F DE F    KH   GI+SMAN G  TNGSQFF+     + LD KH +FG+VV G++V+ A+EKV ++S    K P+ + D
Sbjct:  289 IELHTDYAPHAVYNFVQLA----------KQGYYRNTIFHRNIARFMIQGGDPSGTGRGG-QSIWGKPFKDE-FCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKLED 425          
The following BLAST results are available for this feature:
BLAST of CF835252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
PPIA_MYCBO1.247e-1741.72Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
CYP4_CAEEL2.127e-1737.93Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
CYP10_CAEEL3.629e-1740.60Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorha... [more]
PPIL3_NEUCR6.190e-1743.55Peptidyl-prolyl cis-trans isomerase-like 3 OS=Neur... [more]
PPI1_STAES6.190e-1737.28Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAEQ6.190e-1737.28Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPIL3_DICDI1.056e-1640.60Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]
PPI1_STAHJ1.801e-1637.28Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
CYP9_SCHPO2.352e-1638.30Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]
PPIL2_SCHPO8.938e-1638.26Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835252 ID=CF835252; Name=CF835252; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTATAACAGACAAGCCCTATCTTATTTAAAAAGGC
TTCTCATAGAAAGACATAAAAAACAGTTCATCAGGAACCACCACCGGAGA
CCCGATCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAGATTA
AAAGTCCTACAGACACGGCCACATAATAATAGATAACATAATCACCATCA
CGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGATCAAA
TCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGTCCTT
CCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTCCTTC
GACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTCTTGG
CCGTACAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCC
ATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGC
GAATTTTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGA
AGTCTCCCCCCTGGCACATGAATCCGGGGATCACACGGTGGAAGGACGAG
CCCTTGTAGTGGAGTGGCTTGCCGGACTTGCCGATGCCTTTCTCGCCGGT
GCAGAGGGCGCGGAAGTTCTCGGCGGTTCGGGGGGTGACATCGGCGAAGA
GCTCCATCACGA
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