CF835252

Overview
NameCF835252
Unique NameCF835252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:125..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.842e-54
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRAL TGEKG G       YKGSSFHR+IPGFMCQ           G SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:   23 ELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.842e-54
Identity = 103/150 (68.67%), Postives = 113/150 (75.33%), Query Frame = -3
Query:  258 MELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 707
            MELF DV P+TAENFRALCTGEKG+G+ G  LH+KGS FHR+IP FM Q           GESIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+CT  T WLDG HVVFGQV +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:   40 MELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFHRIIPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   23 ELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_PAPAN (Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   23 ELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_PANTR (Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   23 ELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   23 ELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   23 ELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_HYLSY (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   23 ELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLE (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates leucogenys GN=PPIA PE=3 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   23 ELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLA (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates lar GN=PPIA PE=3 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ           G+SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   23 ELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of CF835252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
PPIA_CRIGR2.842e-5468.46Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
CYP1_CAEEL2.842e-5468.67Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIA_PONPY3.712e-5468.46Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]
PPIA_PAPAN3.712e-5468.46Peptidyl-prolyl cis-trans isomerase A OS=Papio anu... [more]
PPIA_PANTR3.712e-5468.46Peptidyl-prolyl cis-trans isomerase A OS=Pan trogl... [more]
PPIA_PANPA3.712e-5468.46Peptidyl-prolyl cis-trans isomerase A OS=Pan panis... [more]
PPIA_MACMU3.712e-5468.46Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu... [more]
PPIA_HYLSY3.712e-5468.46Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLE3.712e-5468.46Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLA3.712e-5468.46Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06O17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835252 ID=CF835252; Name=CF835252; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTATAACAGACAAGCCCTATCTTATTTAAAAAGGC
TTCTCATAGAAAGACATAAAAAACAGTTCATCAGGAACCACCACCGGAGA
CCCGATCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAGATTA
AAAGTCCTACAGACACGGCCACATAATAATAGATAACATAATCACCATCA
CGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGATCAAA
TCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGTCCTT
CCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTCCTTC
GACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTCTTGG
CCGTACAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCC
ATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGC
GAATTTTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGA
AGTCTCCCCCCTGGCACATGAATCCGGGGATCACACGGTGGAAGGACGAG
CCCTTGTAGTGGAGTGGCTTGCCGGACTTGCCGATGCCTTTCTCGCCGGT
GCAGAGGGCGCGGAAGTTCTCGGCGGTTCGGGGGGTGACATCGGCGAAGA
GCTCCATCACGA
back to top