CF835252

Overview
NameCF835252
Unique NameCF835252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:125..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 103/154 (66.88%), Postives = 116/154 (75.32%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 710
            +MELF DV P+TAENFRALCTGEKGIG SGK + Y+GS FHRVIP FM Q           GESIYG+KFADENF+ KHT PG+LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+VVEGMDVV+ IE   + + R +KP   V IA CGQL
Sbjct:   19 IMELFPDV-PKTAENFRALCTGEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIE--ATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.157e-47
Identity = 97/151 (64.24%), Postives = 108/151 (71.52%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 710
            VMEL ADV P+TAENFRALCTGEKG G       YKG SFHRVIP FM Q           G+SIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+ T K  WLDGKHVVFG+V EGMDVV+ IE +GS +G     ++I +CGQL
Sbjct:   21 VMELRADVVPQTAENFRALCTGEKGFG-------YKGCSFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.395e-47
Identity = 94/150 (62.67%), Postives = 112/150 (74.67%), Query Frame = -3
Query:  255 LFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQLS 701
            L++D+ P+TAENFRALCTGEKG+G+SGKPL YKGS+FHRVI GFMCQ           GESIYG KF DE F   H+ P +LSMANAGP TNGSQFF+  + T  LDGKHVVFG+V++G  VV+ IE   +++G   K PVVIADCGQLS
Sbjct:   25 LYSDLVPKTAENFRALCTGEKGLGQSGKPLWYKGSAFHRVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.740e-47
Identity = 90/146 (61.64%), Postives = 106/146 (72.60%), Query Frame = -3
Query:  261 FADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 698
            FAD  P+TAENFRAL TGEKG         YKGS FHR+IPGFMCQ            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+CTAKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   25 FADKIPKTAENFRALSTGEKGF-------RYKGSCFHRIIPGFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.497e-47
Identity = 91/151 (60.26%), Postives = 109/151 (72.19%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 710
            VMEL +D+ PRTAENFRALCTGE+G G       Y    FHRVIP FMCQ           G+SIYG KF DENF  +H G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV+I+ CG+L
Sbjct:  129 VMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.497e-47
Identity = 90/149 (60.40%), Postives = 104/149 (69.80%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            +LF+D  P+TAENFRALCTGEKG G SGKPLHYK S FHR+IPGFM Q           GESIYG  F DENF  KH G G+LSMANAGP TNGSQFF+    T WLDG H VFGQ+V+G  V+  +E+ GS SG  +  + I DCG+L
Sbjct:   26 KLFSDTVPKTAENFRALCTGEKGKGISGKPLHYKNSYFHRIIPGFMAQGGDFTMGDGRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.791e-47
Identity = 93/149 (62.42%), Postives = 108/149 (72.48%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 704
            +L+ DV P+TAENFRALCTGEKG G       YKGS FHRVIP FM Q           G+SIYG+KFADENFVK+H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +G+D+VK IE  GS SG T+K +VI + GQL
Sbjct:   21 KLYDDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPQFMLQGGDFTNFNGTGGKSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.279e-46
Identity = 94/152 (61.84%), Postives = 110/152 (72.37%), Query Frame = -3
Query:  255 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 710
            V ELF D+ P+TAENFRALCTGEKG GKSGKPL Y+GS FHR+I  FM Q           GESIYG KF DENFV KH  P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V++G  VV+A+E + + S R  +  VIA CG+L+
Sbjct:   21 VFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.279e-46
Identity = 97/151 (64.24%), Postives = 109/151 (72.19%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 710
            V  LF DV P+T ENFRALCTGEKG G       YKGS FHR+IPGFMCQ           G+SIYGSKF DENF  KH+ P +LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:   20 VFALFDDV-PKTVENFRALCTGEKGFG-------YKGSKFHRIIPGFMCQGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 90/151 (59.60%), Postives = 108/151 (71.52%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 710
            VMEL +D+ PRTAENFRALCTG++G G       Y    FHRVIP FMCQ           G+SIYG KF DENF  +H G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV I+ CG+L
Sbjct:   35 VMELRSDIVPRTAENFRALCTGDRGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
The following BLAST results are available for this feature:
BLAST of CF835252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
CYPX_USEUD1.366e-4866.88Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIA1_RHIOR1.157e-4764.24Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
PPID_AMAMU4.395e-4762.67Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PAL4A_HUMAN5.740e-4761.64Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIE_SCHMA7.497e-4760.26Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
CYP6_RHIOR7.497e-4760.40Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPIA_CANAL9.791e-4762.42Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
PPID_RHIOR1.279e-4661.84Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIA_ECHGR1.279e-4664.24Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPIE_SCHJA3.721e-4659.60Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835252 ID=CF835252; Name=CF835252; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTATAACAGACAAGCCCTATCTTATTTAAAAAGGC
TTCTCATAGAAAGACATAAAAAACAGTTCATCAGGAACCACCACCGGAGA
CCCGATCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAGATTA
AAAGTCCTACAGACACGGCCACATAATAATAGATAACATAATCACCATCA
CGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGATCAAA
TCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGTCCTT
CCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTCCTTC
GACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTCTTGG
CCGTACAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCC
ATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGC
GAATTTTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGA
AGTCTCCCCCCTGGCACATGAATCCGGGGATCACACGGTGGAAGGACGAG
CCCTTGTAGTGGAGTGGCTTGCCGGACTTGCCGATGCCTTTCTCGCCGGT
GCAGAGGGCGCGGAAGTTCTCGGCGGTTCGGGGGGTGACATCGGCGAAGA
GCTCCATCACGA
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