CF835252

Overview
NameCF835252
Unique NameCF835252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:125..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.496e-42
Identity = 90/152 (59.21%), Postives = 104/152 (68.42%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 710
            V+ L+ +V P+T ENFRAL TGEKG G       YK S FHRVI  FM Q           G+SIYG +FADENF  +HTGPGILSMANAG  TNGSQFF+ T  T WLDG+HVVFG+V+EGMDVV AIE   +  G R   PV+IADCG+L
Sbjct:   47 VLGLYGEVVPKTVENFRALATGEKGYG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.259e-42
Identity = 91/152 (59.87%), Postives = 102/152 (67.11%), Query Frame = -3
Query:  258 LFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGSSSG--RTNKPVVIADCGQL 701
            L+ DV P+TA NF+ LCTG+ G G       YKGSSFHR+IP FM Q           G+SIYG KFADENF KKH  PG+LSMANAGP TNGSQFFV T  T WLDG+HVVFG+V   E M VVKA+E  GSSSG  R +K   I DCG L
Sbjct:   79 LYDDVVPKTARNFKELCTGQNGFG-------YKGSSFHRIIPEFMLQGGDFTRGNGTGGKSIYGEKFADENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCGAL 223          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.257e-42
Identity = 87/151 (57.62%), Postives = 102/151 (67.55%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 710
            VM L ADV P+TAENFR LCT E+G G       YKG SFHRVIP FMCQ           G+SIYG KF DENF  KH   G LSMAN+G  TNGSQFF+CT KT+WLD KHVVFG V+ G +VV+ +E+ GS SG  ++ +VI  CG+L
Sbjct:  156 VMLLRADVVPKTAENFRQLCTHEQGYG-------YKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.239e-41
Identity = 88/155 (56.77%), Postives = 106/155 (68.39%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV---VIADCGQL 710
            V EL+ DV P+TAENFRALCTGEKG  +S GK LHYKGS FHR+I  FMCQ           GESIYG KF DENF   H  P +LSMANAG  TNGSQFF+ T  T  L+GKHVVFG+V++G  +V+ +E+     G  +KPV   +I+DCG+L
Sbjct:   25 VFELYNDVVPKTAENFRALCTGEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLER--CDKGENDKPVEDWIISDCGEL 177          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 90/153 (58.82%), Postives = 106/153 (69.28%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 710
            V+ELFAD  P+TAENFRALCTGEKGIGK S  PLHYKGS FHR+I GFMCQ           GESIYG+ F DE+F +KH   G+LSMAN GP T  SQFF+ T  T  LDGKHVVFG+VV G +VV+ +E +      R    V+IA+CG+L
Sbjct:   21 VIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMIANCGEL 173          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.759e-41
Identity = 84/130 (64.62%), Postives = 93/130 (71.54%), Query Frame = -3
Query:  321 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 710
            VM LF +V P+T ENFRALCTGEK  G       YKGSSFHR+I  FM Q           G SIYG+KF DENF  KHTGPGILSMANAGP TNGSQFF+CT KT WLD KHVVFGQV+EGM +V+ +E
Sbjct:  112 VMGLFGEVVPKTVENFRALCTGEKKYG-------YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLE 234          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.604e-41
Identity = 85/150 (56.67%), Postives = 100/150 (66.67%), Query Frame = -3
Query:  258 MELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 707
            MELF+++ P+TAENFRALCTGEKG G       +K S FHRVIP F+CQ           G SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V +GMD VK IE  GS  G  ++ ++I +CGQ+
Sbjct:  943 MELFSNIVPKTAENFRALCTGEKGFG-------FKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.147e-41
Identity = 84/151 (55.63%), Postives = 101/151 (66.89%), Query Frame = -3
Query:  258 VMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 710
            +MELF+++ P+TAENFRALCTGEKG G       +K S FHRV+P F+CQ           G+SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V +GMD V+ IE  GS  G  ++ + I +CGQL
Sbjct: 2910 IMELFSNIVPQTAENFRALCTGEKGFG-------FKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.147e-41
Identity = 88/153 (57.52%), Postives = 102/153 (66.67%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSK-FADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 704
            ELF DV PRTAENFR  CTGE      G+P  YKGS FHR+IP FMCQ              IYG+K FADENF+ KH  PG+LSMANAGP TNGSQFF+ T  T +LDGKHVVFG+VV+GMDVVK +E   +     + P   VVIA CG++
Sbjct:   31 ELFKDVVPRTAENFRQFCTGESK-NNLGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIYGTKSFADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQCGEM 182          
BLAST of CF835252 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.147e-41
Identity = 86/150 (57.33%), Postives = 102/150 (68.00%), Query Frame = -3
Query:  258 ELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 704
            ELFAD  P+TAENFRALCTGEKG  ++G PLH+KGSSFHRVI  FM Q           GESIYG KF DE F   H  P +LSMANAGP TNGSQFF+ T +T  LD KHVVFG+++ G  +V+ IE+  +    R  +PV I DCG+L
Sbjct:   23 ELFADKVPKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGEL 172          
The following BLAST results are available for this feature:
BLAST of CF835252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
PPIB_ORPSP2.496e-4259.21Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
CYPH_NEUCR3.259e-4259.87Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIE_DROME4.257e-4257.62Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPID_DEBHA1.239e-4156.77Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
CYP11_RHIOR2.113e-4158.82Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
CP20C_ARATH2.759e-4164.62Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
RBP2_BOVIN3.604e-4156.67E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
RBP2_MOUSE6.147e-4155.63E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPIH_NEUCR6.147e-4157.52Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
PPID_YARLI6.147e-4157.33Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835252 ID=CF835252; Name=CF835252; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTATAACAGACAAGCCCTATCTTATTTAAAAAGGC
TTCTCATAGAAAGACATAAAAAACAGTTCATCAGGAACCACCACCGGAGA
CCCGATCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAGATTA
AAAGTCCTACAGACACGGCCACATAATAATAGATAACATAATCACCATCA
CGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGATCAAA
TCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGTCCTT
CCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTCCTTC
GACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTCTTGG
CCGTACAGACGAAGAACTGAGATCCGTTGGTTCCGGGTCCGGCATTCGCC
ATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCATCGGC
GAATTTTGAGCCGTAGATTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGA
AGTCTCCCCCCTGGCACATGAATCCGGGGATCACACGGTGGAAGGACGAG
CCCTTGTAGTGGAGTGGCTTGCCGGACTTGCCGATGCCTTTCTCGCCGGT
GCAGAGGGCGCGGAAGTTCTCGGCGGTTCGGGGGGTGACATCGGCGAAGA
GCTCCATCACGA
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