CF835254

Overview
NameCF835254
Unique NameCF835254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8420 contig Csv1_Contig8420:76..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIH_RAT (Ferritin heavy chain OS=Rattus norvegicus GN=Fth1 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 59/156 (37.82%), Postives = 79/156 (50.64%), Query Frame = 3
Query:  261 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    D  +    L AM                 HK+A   +D  L DF+E+ YL+EQV++IK++ ++V
Sbjct:    2 TTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMRCALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHV 153          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIH_ECHGR (Ferritin heavy chain OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 60/152 (39.47%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  273 LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            +SL R  F ++CE  IN QIN+E   SY+Y AM  +FDRD+VAL G                 KLM YQ  RGG++  Q I  P +     E    L AME                  VANKN+D Q  +F+E E+L EQV  IKK++ YV
Sbjct:    1 MSLVRQNFHEECERGINRQINMELYASYLYLAMSQHFDRDDVALPGFREFFAKASEEEREHAIKLMRYQCGRGGRIVYQDIAKPQT----TEWASGLEAMEMALKIEREVNESLLALRGVANKNNDSQFCEFLEGEFLGEQVSDIKKLAGYV 148          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIH3_XENLA (Ferritin heavy chain, oocyte isoform OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 56/151 (37.09%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  F  +CEAAIN Q+N+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    +  E  + L A+E                HK++  ++D  L DF+ES YL EQV+++K++ +++
Sbjct:    3 SQIRQNFHQECEAAINRQVNMELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKMQNQRGGRLFLQDIKKP----ERDEWANGLEALECSLQLEKNVNQSILELHKLSTDHNDPHLCDFLESHYLDEQVKSMKELGDHI 149          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIM_TRENE (Ferritin, middle subunit OS=Trematomus newnesi PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  +  DCEAA+N  IN+E   SY Y +M  YF RD+VAL G                 KL+ +QN RGG++ LQ I  P    +  E G  L A++                HK+A+ + D  + DF+E+ YL+EQVE+IKK+ +++
Sbjct:    3 SQVRQNYHRDCEAAVNRMINMELFASYSYTSMAFYFSRDDVALPGFAHFFKENSEEEREHADKLLTFQNSRGGRIFLQDIKKP----ERDEWGSGLDALQSSLQLEKNVNQALLDLHKIASDHTDPHMCDFLETHYLNEQVESIKKLGDFI 149          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIML_PAGBE (Ferritin, liver middle subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  +  DCEAA+N  IN+E   SY Y +M  YF RD+VAL G                 KL+ +QN RGG++ LQ I  P    +  E G  L A++                HK+A+ + D  + DF+E+ YL+EQVE+IKK+ +++
Sbjct:    3 SQVRQNYHRDCEAAVNRMINMELFASYSYTSMAFYFSRDDVALPGFAHFFKENSDEEREHADKLLTFQNSRGGRIFLQDIKKP----ERDEWGSGLDALQSSLQLEKNVNQALLDLHKIASDHTDPHMCDFLETHYLNEQVESIKKLGDFI 149          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FTMT_HUMAN (Ferritin, mitochondrial OS=Homo sapiens GN=FTMT PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  258 PTVPQL--SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            PT P    S  R  F  D EAAIN QIN+E   SYVY +M  YF RD+VAL                   KLM  QN+RGG+++LQ I  P  E D  E G  L+AME                H +A+   D  L DF+E+ YL+EQV++IK++ ++V
Sbjct:   58 PTGPAAGPSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKP--EQDDWESG--LHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHV 212          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRI3_RANCA (Ferritin, lower subunit OS=Rana catesbeiana PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.818e-19
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  F  DCEA +N  +N++++ SYVY +M +YF+RD+VAL                   KL+EYQN+RGG+V LQS+  P    +  +  + L A++                H VA    D  + DF+ES YL E VE IKK+ +++
Sbjct:    3 SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQSVEKP----ERDDWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHI 149          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIMS_PAGBE (Ferritin, spleen middle subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  +  DCEAA+N  IN+E   SY Y +M  YF RD+VAL G                 KL+ +QN RGG++ LQ I  P    +  E G+ +  M+                HK+A+   D  + DF+E+ YL+EQVE+IKK+ +++
Sbjct:    3 SQVRQNYHRDCEAAVNRMINMELFASYSYTSMAFYFSRDDVALPGFAHFFKENSDEEREHADKLLTFQNSRGGRIFLQDIKKP----ERDEWGNGVDVMQCALQLEKNVNQALLDLHKIASGKVDPHMCDFLETHYLNEQVESIKKLGDFI 149          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIH_RABIT (Ferritin heavy chain (Fragment) OS=Oryctolagus cuniculus GN=FTH1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 57/138 (41.30%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  315 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            AIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P  E+D  E G  L AME                HK+A   +D  L DF+E+ YL+EQV++IK++ ++V
Sbjct:    1 AINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP--EYDDWESG--LNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHV 134          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIH1_SCHMA (Ferritin-1 heavy chain OS=Schistosoma mansoni GN=SCM-1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  273 LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            +SL R  + ++CEA +N+QIN+E   SYVY  M  +F+RD+VAL G                 KLM YQN RGG++ LQ I  P            L+AM+                  V  ++ D    DF+ +EYL  QV+++KK+S+Y+
Sbjct:    1 MSLCRQNYHEECEAGVNKQINMELYASYVYMTMAFHFNRDDVALNGFYKFFLNESEEERQHAIKLMTYQNMRGGRIVLQDISAP----PQLSWNSGLHAMQDALDLEKKVNQSLMELVAVGERHRDTHFCDFINNEYLEIQVQSMKKLSDYI 148          
The following BLAST results are available for this feature:
BLAST of CF835254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
FRIH_RAT1.259e-2037.82Ferritin heavy chain OS=Rattus norvegicus GN=Fth1 ... [more]
FRIH_ECHGR1.259e-2039.47Ferritin heavy chain OS=Echinococcus granulosus PE... [more]
FRIH3_XENLA1.644e-2037.09Ferritin heavy chain, oocyte isoform OS=Xenopus la... [more]
FRIM_TRENE4.783e-2035.76Ferritin, middle subunit OS=Trematomus newnesi PE=... [more]
FRIML_PAGBE4.783e-2035.76Ferritin, liver middle subunit OS=Pagothenia berna... [more]
FTMT_HUMAN8.159e-2039.62Ferritin, mitochondrial OS=Homo sapiens GN=FTMT PE... [more]
FRI3_RANCA1.818e-1935.10Ferritin, lower subunit OS=Rana catesbeiana PE=1 S... [more]
FRIMS_PAGBE2.374e-1935.10Ferritin, spleen middle subunit OS=Pagothenia bern... [more]
FRIH_RABIT2.374e-1941.30Ferritin heavy chain (Fragment) OS=Oryctolagus cun... [more]
FRIH1_SCHMA2.374e-1934.21Ferritin-1 heavy chain OS=Schistosoma mansoni GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835254 ID=CF835254; Name=CF835254; organism=Citrus sinensis; type=EST; length=731bp
CAAAAACATTTCATTAAAAAAAAATGTTGCTCGAAGCATCTTCAGCTTTA
TCCCTCGTGAGCCCCCAAAAGGAGGCTCTAAATCCTCTGTTTTCCTCTGT
TTCTTCAGCCTTTCCGCCGAACCCGAGTCTCCGTTTTTCTTCACCGAAAA
ATGATAACGGCGTGGTGGTTTGCGCCTCTAAAAATGCTAACAACAGCCCC
TTAACCGGCGTCATTTTTGCTCCCTTTGAAGAGGTGAAAAAGGAGCTCGA
TTTGGTCCCAACTGTGCCTCAACTGTCTCTTGCCAGACACAAGTTCACTG
ACGATTGTGAGGCCGCAATCAACGAGCAGATCAATGTGGAATACAATGTC
TCCTATGTGTATCATGCCATGTTTGCTTACTTTGACAGAGACAATGTCGC
GCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCAAGTGAAGAGGAAAGAG
AGCATGCTGAGAAATTGATGGAATATCAGAACAAACGAGGAGGTAAAGTG
AAGCTGCAATCAATATTGATGCCTCTCTCTGAGTTTGATCATGCTGAGAA
AGGAGATGCTTTGTATGCCATGGAGCTTACGCTGTCTCTGGAGAAGCTAA
CAAATGAGAAACTCCTCAACTTGCACAAGGTGGCCAACAAGAACCATGAT
GTGCAGTTGGCAGATTTCGTTGAAAGCGAGTATTTACATGAGCAGGTAGA
AGCCATCAAAAAGATATCTGAATATGTTGCT
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