CF835254

Overview
NameCF835254
Unique NameCF835254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8420 contig Csv1_Contig8420:76..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FTMT_MOUSE (Ferritin, mitochondrial OS=Mus musculus GN=Ftmt PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.049e-19
Identity = 60/151 (39.74%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  F  D EAAIN QIN+E   SYVY +M  YF RD+VAL                   KLM+ QN+RGG++ LQ I  P  + D  E G  L AME                H +A++  D  L DF+E+ YLHEQV++IK++ ++V
Sbjct:   62 SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALYNFSKYFLRQSLEEREHAEKLMKLQNQRGGRICLQDIKKP--DKDDWECG--LRAMECALLLEKNVNQSLLDLHTLASEKGDPHLCDFLETHYLHEQVKSIKELGDHV 208          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FTMT_BOVIN (Ferritin, mitochondrial OS=Bos taurus GN=FTMT PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 57/151 (37.75%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  F  D EAAIN QIN+E   SYVY +M  YF RD+VAL                   KLM  QN+RGG + LQ I  P    D  +    L AME                H +A+   D  L DF+E+ YL+EQV++IK++ ++V
Sbjct:   66 SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALHNFARYFLRLSREEAEHAEKLMRLQNQRGGLICLQDIKKP----DQNDWKSGLNAMECALLLEKNVNQSLLELHTLASDKGDPHLCDFLETHYLNEQVKSIKELGDHV 212          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRI_PACLE (Ferritin OS=Pacifastacus leniusculus PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 54/151 (35.76%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  RH + +DCE  IN+QIN+E+  SYVY +M  YFDRD+++L G                 KLM+YQNKRG ++ LQ+I  P  +    E G+   A++                   A+K +D  L + +E E+L EQVE+I+KI   +
Sbjct:    3 SQIRHNYHEDCEP-INKQINLEFYASYVYMSMGHYFDRDDISLPGASKFFKDSSDEEREHGQKLMKYQNKRGARIVLQAIAAPSLQ----EWGNLHDALQAALDLENEVNQSLLDLDATASKINDPHLTNMLEGEFLEEQVESIEKIGNLI 148          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FHL17_HUMAN (Ferritin heavy polypeptide-like 17 OS=Homo sapiens GN=FTHL17 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 57/154 (37.01%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  270 QLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVA 731
            Q S  R K+  +C+AAIN  I +E   SY+Y +M  YF+RD+VAL+                  KLM  QN RGG + L  I  P  E    E G  L AME                +++A +  D QL  F+ES YLHEQV+ IK++  YV+
Sbjct:    5 QPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDDKMEHAQKLMRLQNLRGGHICLHDIRKP--ECQGWESG--LVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVS 154          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIL_XENLA (Ferritin light chain, oocyte isoform OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  + ++ EA +N   N+E   SY+Y ++  YFDRD+VAL                     +++QNKRGG+V LQ +  P    D  E G+   AME                HK+A  + D  + D++E E+L E+V+ IKK+ +++
Sbjct:    5 SQIRQNYHEESEAGVNRIANLELQASYLYLSVGYYFDRDDVALSKFSKFFRELSEKKRDHAEDFLKFQNKRGGRVVLQDVKKP----DDDEWGNGTKAMEVALNLEKSINQAVLDLHKIATDHTDPHMQDYLEHEFLEEEVKLIKKLGDHL 151          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIL_RABIT (Ferritin light chain OS=Oryctolagus cuniculus GN=FTL PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 44/151 (29.14%), Postives = 75/151 (49.67%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +L++ QN+RGG+   Q +  P  +    E G  L AME                H + + + D  L DF+E+ +L E+V+ +KK+ +++
Sbjct:    3 SQIRQNYSPEVEAAVNHLVNLHLRASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREAAERLLKMQNQRGGRALFQDVQKPSQD----EWGKTLNAMEAALALEKNLNQALLDLHALGSAHTDPHLCDFLENHFLDEEVKLLKKMGDHL 149          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIL1_MOUSE (Ferritin light chain 1 OS=Mus musculus GN=Ftl1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 45/151 (29.80%), Postives = 72/151 (47.68%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  ++ + EAA+N  +N+    SY Y ++  +FDRD+VAL+G+                +L+E+QN RGG+   Q +  P  +    E G    AME                H + +   D  L DF+ES YL ++V+ IKK+  ++
Sbjct:    3 SQIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREGAERLLEFQNDRGGRALFQDVQKPSQD----EWGKTQEAMEAALAMEKNLNQALLDLHALGSARTDPHLCDFLESHYLDKEVKLIKKMGNHL 149          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIL_HORSE (Ferritin light chain OS=Equus caballus GN=FTL PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 45/151 (29.80%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +L++ QN+RGG+   Q +  P  +    E G  L AM+                H + +   D  L DF+ES +L E+V+ IKK+ +++
Sbjct:    3 SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHL 149          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIL_CANFA (Ferritin light chain OS=Canis familiaris GN=FTL PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 44/151 (29.14%), Postives = 73/151 (48.34%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                + ++ QN+RGG+   Q +  P  +    E G  L AME                H + +   D  L DF+E+ +L E+V+ IKK+ +++
Sbjct:    3 SQIRQNYSTEVEAAVNRLVNMHLRASYTYLSLGFYFDRDDVALEGVGHFFRELAEEKREGAERFLKMQNQRGGRALFQDVQKPSQD----EWGKTLDAMEAALLLEKSLNQALLDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHL 149          
BLAST of CF835254 vs. ExPASy Swiss-Prot
Match: FRIL_PONAB (Ferritin light chain OS=Pongo abelii GN=FTL PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 45/151 (29.80%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  276 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYV 728
            S  R  ++ D EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +L++ QN+RGG+   Q I  P  +    E G    AM+                H + + + D  L DF+E+ +L E+V+ IKK+ +++
Sbjct:    3 SQIRQNYSTDVEAAVNSLVNMYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSAHTDPHLCDFLETHFLDEEVKLIKKMGDHL 149          
The following BLAST results are available for this feature:
BLAST of CF835254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
FTMT_MOUSE4.049e-1939.74Ferritin, mitochondrial OS=Mus musculus GN=Ftmt PE... [more]
FTMT_BOVIN5.847e-1837.75Ferritin, mitochondrial OS=Bos taurus GN=FTMT PE=2... [more]
FRI_PACLE1.303e-1735.76Ferritin OS=Pacifastacus leniusculus PE=1 SV=1[more]
FHL17_HUMAN8.443e-1737.01Ferritin heavy polypeptide-like 17 OS=Homo sapiens... [more]
FRIL_XENLA1.592e-1531.13Ferritin light chain, oocyte isoform OS=Xenopus la... [more]
FRIL_RABIT1.032e-1429.14Ferritin light chain OS=Oryctolagus cuniculus GN=F... [more]
FRIL1_MOUSE1.761e-1429.80Ferritin light chain 1 OS=Mus musculus GN=Ftl1 PE=... [more]
FRIL_HORSE3.003e-1429.80Ferritin light chain OS=Equus caballus GN=FTL PE=1... [more]
FRIL_CANFA3.003e-1429.14Ferritin light chain OS=Canis familiaris GN=FTL PE... [more]
FRIL_PONAB5.122e-1429.80Ferritin light chain OS=Pongo abelii GN=FTL PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06O18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835254 ID=CF835254; Name=CF835254; organism=Citrus sinensis; type=EST; length=731bp
CAAAAACATTTCATTAAAAAAAAATGTTGCTCGAAGCATCTTCAGCTTTA
TCCCTCGTGAGCCCCCAAAAGGAGGCTCTAAATCCTCTGTTTTCCTCTGT
TTCTTCAGCCTTTCCGCCGAACCCGAGTCTCCGTTTTTCTTCACCGAAAA
ATGATAACGGCGTGGTGGTTTGCGCCTCTAAAAATGCTAACAACAGCCCC
TTAACCGGCGTCATTTTTGCTCCCTTTGAAGAGGTGAAAAAGGAGCTCGA
TTTGGTCCCAACTGTGCCTCAACTGTCTCTTGCCAGACACAAGTTCACTG
ACGATTGTGAGGCCGCAATCAACGAGCAGATCAATGTGGAATACAATGTC
TCCTATGTGTATCATGCCATGTTTGCTTACTTTGACAGAGACAATGTCGC
GCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCAAGTGAAGAGGAAAGAG
AGCATGCTGAGAAATTGATGGAATATCAGAACAAACGAGGAGGTAAAGTG
AAGCTGCAATCAATATTGATGCCTCTCTCTGAGTTTGATCATGCTGAGAA
AGGAGATGCTTTGTATGCCATGGAGCTTACGCTGTCTCTGGAGAAGCTAA
CAAATGAGAAACTCCTCAACTTGCACAAGGTGGCCAACAAGAACCATGAT
GTGCAGTTGGCAGATTTCGTTGAAAGCGAGTATTTACATGAGCAGGTAGA
AGCCATCAAAAAGATATCTGAATATGTTGCT
back to top