CF835264
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1) HSP 1 Score: 382.874 bits (982), Expect = 8.628e-106 Identity = 182/227 (80.18%), Postives = 202/227 (88.99%), Query Frame = 1 Query: 1 WKMAVWKLQSHQPFHFVPSKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAID 681 W + L SH F +DAVLLASQD +WPVI+PLPSYGRGRD GRY+SLIFGTNLTDV+ITGDNGTIDGQG LWW++F G+LKYTRPYLIE+MYS +IQISNLTL+NSPSWNVHPVYS ++++QGITILAPV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWD+YGIAYGMPTKQL+IRRLTCISP+SAVIALGSEMSGGIQDVRAEDI AI+ Sbjct: 107 WLTGSFSLTSH--FTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAIN 331
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17 Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 1 Query: 169 IFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525 I T++ +VI GD G I+GQG WW E K +RP ++ N+++S LT ++SP ++H + V + + I AP +SPNTDGI+ + +N I+DC I +GDDC+A+ SG Sbjct: 107 ILFTDIEGLVIEGD-GEINGQGSSWW------EHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG 218
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16 Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1 Query: 184 LTDVVITGDNGTIDGQGELWWRKFRAGELKYT----------RPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525 LTD + G G IDGQG+ WW AG+ K RP I+I YS+++ + LTL+NSP +++ V +QG+ I AP SPNTDGI+ + IE C I +GDDC+A+ +G Sbjct: 145 LTDFNLMG-TGVIDGQGQQWW----AGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG 263
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16 Identity = 47/130 (36.15%), Postives = 65/130 (50.00%), Query Frame = 1 Query: 292 IEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG-WDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAI 678 + ++ Q+ T+ N+ SW +HP + TI+AP SPNTDG NP+SC N I GDDC+AVK+G G + + I R + P + +GSEMSGG+ DV ED I Sbjct: 25 LHLVSCHKTQLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMI 154
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15 Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 1 Query: 184 LTDVVITGDNGTIDGQGELWWR---KFRAGELKYT---RPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTC 591 LTD + G G IDGQG WW K G RP I+I +S+++ + LTL NSP +++ V +QGI I AP SPNTDGI+ + IE C I +GDDCVAV +G + + I+ LTC Sbjct: 146 LTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTC 275
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13 Identity = 55/141 (39.01%), Postives = 72/141 (51.06%), Query Frame = 1 Query: 139 DTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEL--------WW---RKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSS--VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 522 DT G + I T+ T+ I G GTIDGQG + WW + +LK P LI+I S+N + N++LINSP N H V+S TI P T+ NTDGI+P S N I I +GDD VA+K+ Sbjct: 119 DTNGKGCDAFITATSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIKA 256
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12 Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = 1 Query: 205 GDNGTIDGQGELWWR---KFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525 GD G +DG GE WW+ K + P + S+++ + NL + N+ + S+V V + + AP SPNTDGI+ + N R+ + I +GDDC++++SG Sbjct: 163 GDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG 272
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12 Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 1 Query: 184 LTDVVITGDNGTIDGQGELWWRKFRAGELKYT----------RPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525 LT + G G IDGQG+ WW AG+ K+ RP I+ +S + I L L+NSP +++ V + GI+I AP SPNTDGI+ + N ++ I +GDDCVA+ +G Sbjct: 145 LTGFTLMG-KGVIDGQGKQWW----AGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG 263
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12 Identity = 38/114 (33.33%), Postives = 66/114 (57.89%), Query Frame = 1 Query: 190 DVVITGDNGTIDGQGELWWRKFRAGELKYTR--PYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525 ++V+TG GT G+GE W+ G+ P ++ +N++I+ ++ +N+ ++++ V + +V +Q I + AP SPNTDGI+ + N I D I +GDDCV+V G Sbjct: 137 NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRG 249
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR2_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=pehA PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11 Identity = 53/141 (37.59%), Postives = 70/141 (49.65%), Query Frame = 1 Query: 139 DTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEL--------WWR---KFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSS--VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 522 D G + I + T+ I G GTIDGQG + WW + +LK P LI+I S+N + N++LINSP N H V+S TI P T+ NTDGI+P S N I I +GDD VA+K+ Sbjct: 119 DKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKA 256 The following BLAST results are available for this feature:
BLAST of CF835264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835264 ID=CF835264; Name=CF835264; organism=Citrus sinensis; type=EST; length=682bpback to top |