CF835266

Overview
NameCF835266
Unique NameCF835266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.721e-16
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = -2
Query:  252 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 557
            V +VT++  +D  +S+     ++VI +F A WCGPC+ IAPF+ E S+ Y  ++F+ VDVDE+ E +   +I + PTF   K+G  VD L+GAN   L++ +
Sbjct:    2 VKIVTSQAEFDSIISQ----NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLI 99          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.721e-16
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = -2
Query:  240 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 539
            KD  D         GK+V+ +F ATWCGPC+MI+P  +ELS +Y  +++ L VDVDE  + +  ++I + PTF FLK+G +V++  GAN   L+  + A +
Sbjct:    6 KDKADLNGQLTKASGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKANI 106          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 40/97 (41.24%), Postives = 66/97 (68.04%), Query Frame = -2
Query:  240 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 527
            D ++++AS  GK+V+ +F ATWCGPC+MI+P   ELS ++  +++ L VDVDE  + +  ++I + PTF FLK+G +V++  GAN   L+  + A +
Sbjct:   20 DGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15
Identity = 41/103 (39.81%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  252 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQV-DKLVGANKPELQKKV 557
            V+ + TK  +DQ + +A    K+V+ +F+A+WCGPC+ IAP + E+++++P ++F  VDVDE  E + +  I+A PTF F K G+ + D + GAN+  L++K+
Sbjct:    2 VNFLKTKADFDQALKDAGD--KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKI 102          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  252 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 512
            E S   +++I +F A WCGPCRMI+P F + S +Y +  FL V+ D   +    ++I A PTF FLK+ QQVD + GAN+  + +K+
Sbjct:   17 ERSDANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKI 103          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 8.230e-15
Identity = 33/85 (38.82%), Postives = 56/85 (65.88%), Query Frame = -2
Query:  240 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 494
            K+V+ +F ATWCGPC+MIAP   + +E+Y    F  +DVDE+ + +   ++ + PT  F K G++V ++VGAN   +++ +A+ V
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.404e-14
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = -2
Query:  249 MSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 518
            +S   K G + +  + A WCGPC+ I+P FS+L+ KY  P  +F  V+VDE  + ++   +KA PTF F ++G+Q+D L GAN   L++KVA
Sbjct:   13 ISTIPKSGYLAVDCY-ADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.404e-14
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = -2
Query:  237 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVD 539
            K + + K       G +V+ +F ATWCGPC+ IAP   +LSE +  + F  VDVDEL E + S  + A PTF F K G++ +++ GAN   +Q  V A ++
Sbjct:    7 KSVAEYKEKVTDATGPVVV-DFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQAGVKAILE 106          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = -2
Query:  246 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 569
            A  +V  +T+K  + +K+  A  +G +V+  F ATWCGPC+ IAP   + ++ Y    F  +DVDEL E +    I+A PTF   KDGQ+V  +VGAN   L+  + A
Sbjct:    3 ASEHVPPITSKAEFQEKVLNA--KGFVVVDCF-ATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKA 107          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.127e-14
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  252 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 503
            K+   ++ +F ATWCGPC+M+ P  ++L + YP + F+  DVDE  + +   ++ A PTF   KDGQ + K++GAN   L+K +
Sbjct:   41 KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 124          
The following BLAST results are available for this feature:
BLAST of CF835266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
THIO_PLAF79.721e-1640.20Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO2_DROYA9.721e-1640.59Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_DROME3.694e-1541.24Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO_GEOCY4.825e-1539.81Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
NGLY1_CAEEL4.825e-1542.53Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRX2_YEAST8.230e-1538.82Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
TXL1_SCHPO1.404e-1442.39Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
THIO_PENCH1.404e-1439.60Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_EMENI1.833e-1439.81Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
TRX3_YEAST3.127e-1439.29Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835266 ID=CF835266; Name=CF835266; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTCCTTTCATTGTTTCATGAACAGGGTTGGATCGTTT
CACAAATCACATAAGCAGCCATTTCTACAGAAAGTACTGCATAAATATAC
AACCAAAAAAAAAAAAAAATCTTGCAATCAAGCAATCTTATCTAACTACT
AGCACAGAAACATACACAGATTGGTGGCAATGCTAACACAGATTGGACGA
CCATTGTAATCATCATTTTTGACTTGGGACAACTGAGTCTACAGCCGCCG
CTACCTTCTTCTGTAGCTCTGGCTTGTTTGCTCCAACTAGCTTGTCAACT
TGCTGCCCATCTTTAAGAAAGAAGAAAGTTGGAGTGGCTTTGATATCCCA
TGAAGTGCTGAACTCAACTAGTTCATCAACATCGACCAAAAGGAACATTA
ACGAAGGGTATTTCTCAGATAGCTCGCTGAAAAATGGTGCAATCATTCTA
CAAGGACCACACCATGTTGCGCTGAAGTTCGCAATCACTATCTTCCCTTC
CTTACTAGCTTCTGACATCTTTTGGTCCCATATATCTTTGGTAGTAACAA
GACTCACATTCCCACCAGCAAACTCAACAGGGTGTTCACCATCCTCCTCA
TCATGTTGACGCTTGGACAAACACGTTCCCATATTGAAGCTTTGA
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