CF835266

Overview
NameCF835266
Unique NameCF835266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.647e-13
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = -2
Query:  273 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANK 512
            E S   +++I +F A WCGPCRMI+P F  LS ++ +  FL V+ D   +    + I A PTF F K+ QQVD + GAN+
Sbjct:   17 EKSDSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANE 96          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = -2
Query:  258 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPS-LMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK 548
            V  KD  DQ++  A  E K+V+ +F A WCGPC++IAP   EL+ +Y   ++ L V+VDE  + +  +++ + PTF F+K G  ++  VG N  +L K
Sbjct:    5 VRNKDDLDQQLILA--EDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAK 100          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = -2
Query:  240 VIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 488
            V+ +FSA WCGPCR IAP F +LS ++ +  F+ VD+D++       +I++ PTF+F  +G +V +  GAN+  L+  + A +
Sbjct:   22 VVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATLRSTLEANI 104          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = -2
Query:  282 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVG 548
            +T K   DQ +S   K    V+ +F A WCGPC+++ P F E+++      F+ VDVD+  E S+ ++I++ PT  F +DG+  DK +G
Sbjct:    4 ITNKAELDQLLSTNKK----VVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIG 88          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 35/105 (33.33%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  249 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 563
            G V ++  K+ +++ + +A +  K+V  +FSA WCGPCRM+ P F  LS K+  ++FL VD ++  +     +I   PTF F K+ ++V +  GA   +L++ ++
Sbjct:  410 GLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSIS 512          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO1_DICDI (Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = -2
Query:  246 VIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 488
            V+ +FSA WCGPCR I+P F +LS ++ +  FL VD+D+L        IK+ PTF F ++G +V +  GA++  L+  + A
Sbjct:   23 VVVDFSAVWCGPCRAISPVFEKLSNEFITFTFLHVDIDKLNVHPIVSKIKSVPTFHFYRNGSKVSEFSGASESILRSTLEA 103          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  249 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 563
            G V ++  K+ +++ + +A +  K+V  +FSA WCGPCR + P F  LS K+  ++FL VD ++  +     ++   PTF F K+ ++V +  GA   +L+K +A
Sbjct:  445 GMVRVIKDKEEFEEVLKDAGE--KLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKLEKSIA 547          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = -2
Query:  267 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 539
            K+I D    + + EG +V+ +F ATWCGPCRM+AP   E+  E+  +L  + +DVDE  E   S+ + + PT    KDG+ V+ ++G    E
Sbjct:    3 KEITDATFEQETSEG-LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKE 93          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = -2
Query:  267 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSEL-SEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 539
            K+I D    + + EG +V+ +F ATWCGPCRM+AP   E+  E+  +L  + +DVDE  E   S+ + + PT    KDG+ V+ ++G    E
Sbjct:    3 KEITDATFEQETSEG-LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKE 93          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 29/98 (29.59%), Postives = 58/98 (59.18%), Query Frame = -2
Query:  246 KDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 539
            K +    +  A K  K+++ +F ATWCGPC+ +AP    ++++   ++F+ +DVDE  + +  + + A PT    K+G ++  +VGAN+  +++ + A
Sbjct:    8 KQVDGDALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELIQA 105          
The following BLAST results are available for this feature:
BLAST of CF835266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NGLY1_CAEBR2.647e-1343.75Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIOT_DROME5.898e-1338.78Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO3_DICDI1.006e-1238.55Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]
THIO_MYCGA1.314e-1237.08Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
TXND2_MOUSE4.993e-1233.33Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
THIO1_DICDI4.993e-1240.74Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA ... [more]
TXND2_RAT6.521e-1233.33Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
THIO_LISMO1.897e-1138.04Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN1.897e-1138.04Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_ECHGR1.897e-1129.59Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835266 ID=CF835266; Name=CF835266; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTCCTTTCATTGTTTCATGAACAGGGTTGGATCGTTT
CACAAATCACATAAGCAGCCATTTCTACAGAAAGTACTGCATAAATATAC
AACCAAAAAAAAAAAAAAATCTTGCAATCAAGCAATCTTATCTAACTACT
AGCACAGAAACATACACAGATTGGTGGCAATGCTAACACAGATTGGACGA
CCATTGTAATCATCATTTTTGACTTGGGACAACTGAGTCTACAGCCGCCG
CTACCTTCTTCTGTAGCTCTGGCTTGTTTGCTCCAACTAGCTTGTCAACT
TGCTGCCCATCTTTAAGAAAGAAGAAAGTTGGAGTGGCTTTGATATCCCA
TGAAGTGCTGAACTCAACTAGTTCATCAACATCGACCAAAAGGAACATTA
ACGAAGGGTATTTCTCAGATAGCTCGCTGAAAAATGGTGCAATCATTCTA
CAAGGACCACACCATGTTGCGCTGAAGTTCGCAATCACTATCTTCCCTTC
CTTACTAGCTTCTGACATCTTTTGGTCCCATATATCTTTGGTAGTAACAA
GACTCACATTCCCACCAGCAAACTCAACAGGGTGTTCACCATCCTCCTCA
TCATGTTGACGCTTGGACAAACACGTTCCCATATTGAAGCTTTGA
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