CF835266

Overview
NameCF835266
Unique NameCF835266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
[Close]
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  267 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLL-VDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 512
            ++  E  + + +F ATWCGPC+MIAP   EL+  Y     +L +DVDE    +  +++ + PT    KDGQ VDK+VG    E
Sbjct:   12 DSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 94
The following BLAST results are available for this feature:
BLAST of CF835266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
THIO_STAAW3.236e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU3.236e-1139.76Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS3.236e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR3.236e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN3.236e-1139.76Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM3.236e-1139.76Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC3.236e-1139.76Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB3.236e-1139.76Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA83.236e-1139.76Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA33.236e-1139.76Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835266 ID=CF835266; Name=CF835266; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTCCTTTCATTGTTTCATGAACAGGGTTGGATCGTTT
CACAAATCACATAAGCAGCCATTTCTACAGAAAGTACTGCATAAATATAC
AACCAAAAAAAAAAAAAAATCTTGCAATCAAGCAATCTTATCTAACTACT
AGCACAGAAACATACACAGATTGGTGGCAATGCTAACACAGATTGGACGA
CCATTGTAATCATCATTTTTGACTTGGGACAACTGAGTCTACAGCCGCCG
CTACCTTCTTCTGTAGCTCTGGCTTGTTTGCTCCAACTAGCTTGTCAACT
TGCTGCCCATCTTTAAGAAAGAAGAAAGTTGGAGTGGCTTTGATATCCCA
TGAAGTGCTGAACTCAACTAGTTCATCAACATCGACCAAAAGGAACATTA
ACGAAGGGTATTTCTCAGATAGCTCGCTGAAAAATGGTGCAATCATTCTA
CAAGGACCACACCATGTTGCGCTGAAGTTCGCAATCACTATCTTCCCTTC
CTTACTAGCTTCTGACATCTTTTGGTCCCATATATCTTTGGTAGTAACAA
GACTCACATTCCCACCAGCAAACTCAACAGGGTGTTCACCATCCTCCTCA
TCATGTTGACGCTTGGACAAACACGTTCCCATATTGAAGCTTTGA
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