CF835267

Overview
NameCF835267
Unique NameCF835267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 48/105 (45.71%), Postives = 73/105 (69.52%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            G V    T D+W  ++ +A +  K+++ +F+A+WC PCRMIAP F++L++K+  S +F  VDVDEL   +  + ++A PTF F+K G+ VDKLVGANK +LQ K+
Sbjct:    6 GQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKI 110          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 7.872e-22
Identity = 46/104 (44.23%), Postives = 73/104 (70.19%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            G V  V + + W  ++ EA+   K+V+ +F+A+WCGPCR++AP F++L++K+P+ +FL VDVDEL   +  + ++A PTF F+K+G   D++VGA K EL  KV
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKV 121          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 40/104 (38.46%), Postives = 75/104 (72.12%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            G V    T ++W++K+ +A++  K+++ +F+A+WC PCR IAP F+E+++K+ +++F  +DVDEL   +  + ++A PTF F+K+G  +D++VGA K E+ +K+
Sbjct:    5 GEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKL 108          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20
Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 448
            V  + +K  + + ++ A +  K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + +   ++K  PTF F K GQ+VD+  GANK +L+  +   +
Sbjct:    2 VKQIESKSAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATIKGLI 105          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.319e-20
Identity = 42/104 (40.38%), Postives = 69/104 (66.35%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            G V    T + W+ K+  A +  K+++ +F+A WC PCR IAP F EL++K+  ++F  VDVDEL   +  +D++A PTF ++K  +++DK+VGA K E++ K+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKL 114          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.319e-20
Identity = 42/104 (40.38%), Postives = 69/104 (66.35%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            G V    T + W+ K+  A +  K+++ +F+A WC PCR IAP F EL++K+  ++F  VDVDEL   +  +D++A PTF ++K  +++DK+VGA K E++ K+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKL 114          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.319e-20
Identity = 42/104 (40.38%), Postives = 69/104 (66.35%), Query Frame = 2
Query:  125 GNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            G V    T + W+ K+  A +  K+++ +F+A WC PCR IAP F EL++K+  ++F  VDVDEL   +  +D++A PTF ++K  +++DK+VGA K E++ K+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKL 114          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.641e-20
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            V  + +KD + + +  A    K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    2 VKQIDSKDAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.641e-19
Identity = 46/107 (42.99%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  122 GGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYP-SLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 439
            GG+V ++ +K  WD ++++  +E K ++ +F+ATWCGPC+MIAP F  LS  Y   ++FL VDVD +   + +  I A PTF   KDG + D LVGA++ +L+  VA
Sbjct:    2 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVA 108          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.144e-19
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            V  + +K  + + ++ A +  K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + +   ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    2 VKQIESKYAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CF835267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TRXH4_ARATH2.705e-2245.71Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT7.872e-2244.23Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH5_ARATH2.290e-2138.46Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
THIO_HORSE1.485e-2042.45Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
TRXH_BRARA4.319e-2040.38Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL4.319e-2040.38Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA4.319e-2040.38Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
THIO_CALJA5.641e-2044.12Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
TRXH_CHLRE1.641e-1942.99Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_SHEEP2.144e-1943.14Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835267 ID=CF835267; Name=CF835267; organism=Citrus sinensis; type=EST; length=689bp
GTTGTCTGGTCTTTTGTCTGTTAACTGTTAGCTTTCAGGCCTTCAAAGCT
TCAATATGGGAACGTGTTTGTCCAAGCGTCAACATGATGAGGAGGATGGT
GAACACCCTGTTGAGTTTGCTGGTGGGAATGTGAGTCTTGTTACTACCAA
AGATATATGGGACCAAAAGATGTCAGAAGCTAGTAAGGAAGGGAAGATAG
TGATTGCGAACTTCAGCGCAACATGGTGTGGTCCTTGTAGAATGATTGCA
CCATTCTTCAGCGAGCTATCTGAGAAATACCCTTCGTTAATGTTCCTTTT
GGTCGATGTTGATGAACTAGTTGAGTTCAGCACTTCATGGGATATCAAAG
CCACTCCAACTTTCTTCTTTCTTAAAGATGGGCAGCAAGTTGACAAGCTA
GTTGGAGCAAACAAGCCAGAGCTACAGAAGAAGGTAGCGGCGGCTGTAGA
CTCAGTTGTCCCAAGTCAAAAATGATGATTACAATGGTCGTCCAATCTGT
GTTAGCATTGCCACCAATCTGTGTATGTTTCTGTGCTAGTAGTTAGATAA
GATTGCTTGATTGCAAGATTTTTTTTTTTTTTTGGTTGTATATTTATGCA
TTACTTTCTGTAGAAATGGCTGCTTATGTGATTTGTGATTCAATCCAACC
CTGTTCATGAAACAATGAAATGGAAAAAAAAAAAAAAAA
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