CF835267

Overview
NameCF835267
Unique NameCF835267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.144e-19
Identity = 44/102 (43.14%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            V  + +K  + + ++ A +  K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    2 VKQIESKYAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.144e-19
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            V  + +K  + + + +A    K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    2 VKQIESKAAFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19
Identity = 42/97 (43.30%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  152 DIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 439
            D+W  ++  A +  K+++ +F+A+WC PCRMIAP F++L++K+  S +F  VDVDEL   +  + ++A PTF  +KDG  VDK+VGA K +L   +A
Sbjct:   15 DVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIA 111          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19
Identity = 43/102 (42.16%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            V L+ +K+ + + ++ A    K+V+ +FSATWCGPC+MI PFF  L +KY +++FL VDVD+  + +   ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    2 VKLIESKEAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASI 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            V  + +K  + + ++ A +  K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + +   ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    2 VKQIESKYAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 43/102 (42.16%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            V L+ +K+ + + ++ A    K+V+ +FSATWCGPC+MI PFF  L +KY +++FL VDVD+  + +   ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    2 VKLIESKEAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            V  + +K  + + +  A    K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.776e-19
Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  140 VTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 454
            + + + W+  +S+A  +   ++A+F+A WC P   +  FF EL+  Y   +FL+VDVDE+ E ++  ++KA PTF FLKDG  +DKLVGAN  E++K+V   V S
Sbjct:    7 IDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVDGFVQS 111          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTF-FFLKDGQQVDKLVGANKPELQKKV 436
            V  + +K  + + +  A    K+V+ +FSATWCGPC+MI PFF  LSEKY +++FL VDVD+  + ++  ++K  PTF FF K GQ+V +  GANK +L+  +
Sbjct:    2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 41/102 (40.20%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  119 AGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPEL 424
            A G V    T + W +K+  A++  K+++ +F+ATWC PCR IAP F++L++K+  ++F  VDVDEL   +  + ++A PTF F+K+G+  + +VGA K E+
Sbjct:    3 AEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEI 104          
The following BLAST results are available for this feature:
BLAST of CF835267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
THIO_PIG2.144e-1943.14Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_MACMU2.144e-1943.14Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
TRXH2_BRANA2.800e-1943.30Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
THIO_MOUSE2.800e-1942.16Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_BOVIN2.800e-1943.14Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_RAT3.657e-1942.16Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_HUMAN3.657e-1943.14Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
TRXL4_ARATH4.776e-1941.90Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_PONAB8.146e-1943.69Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
TRXH3_ARATH1.815e-1840.20Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06P01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835267 ID=CF835267; Name=CF835267; organism=Citrus sinensis; type=EST; length=689bp
GTTGTCTGGTCTTTTGTCTGTTAACTGTTAGCTTTCAGGCCTTCAAAGCT
TCAATATGGGAACGTGTTTGTCCAAGCGTCAACATGATGAGGAGGATGGT
GAACACCCTGTTGAGTTTGCTGGTGGGAATGTGAGTCTTGTTACTACCAA
AGATATATGGGACCAAAAGATGTCAGAAGCTAGTAAGGAAGGGAAGATAG
TGATTGCGAACTTCAGCGCAACATGGTGTGGTCCTTGTAGAATGATTGCA
CCATTCTTCAGCGAGCTATCTGAGAAATACCCTTCGTTAATGTTCCTTTT
GGTCGATGTTGATGAACTAGTTGAGTTCAGCACTTCATGGGATATCAAAG
CCACTCCAACTTTCTTCTTTCTTAAAGATGGGCAGCAAGTTGACAAGCTA
GTTGGAGCAAACAAGCCAGAGCTACAGAAGAAGGTAGCGGCGGCTGTAGA
CTCAGTTGTCCCAAGTCAAAAATGATGATTACAATGGTCGTCCAATCTGT
GTTAGCATTGCCACCAATCTGTGTATGTTTCTGTGCTAGTAGTTAGATAA
GATTGCTTGATTGCAAGATTTTTTTTTTTTTTTGGTTGTATATTTATGCA
TTACTTTCTGTAGAAATGGCTGCTTATGTGATTTGTGATTCAATCCAACC
CTGTTCATGAAACAATGAAATGGAAAAAAAAAAAAAAAA
back to top