CF835267

Overview
NameCF835267
Unique NameCF835267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  131 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            V  + +K  + + +  A    K+V+ +FSATWCGPC+MI PFF  LSEK+ +++F+ VDVD+  + +   ++K  PTF F K GQ+V +  GANK +L+  +
Sbjct:    2 VKQIESKSAFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  173 SEASKEG-KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            +E S  G K+++ +FSATWCGPC+MI PFF  + EKYP ++F+ +DVD+  + ++  D+K  PTF F K+ ++V +  GANK +L++ +
Sbjct:   13 AELSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAI 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 36/94 (38.30%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  158 WDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 439
            W    +E  +  K+++ +FSA+WCGPCRMI P    +++K+  + F+ +DVDEL + +  +++ A PTF  +K G+++++++GA K EL+KKV+
Sbjct:   36 WQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVS 129          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  194 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAV 448
            K+V+ +FSATWCGPC+MI PFF  L +K+  ++F+ +DVD+  + +T  D+K  PTF F K+G++V +  GANK +L++ + + V
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIKSLV 105          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  194 KIVIANFSATWCGPCRMIAPFFSELS--EKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            K+V+ +F+ATWCGPC+ I P F  LS  E Y +++FL VDVD+  + S+  DIK  PTF F K+GQ++D+  GAN+  L++K+
Sbjct:   21 KLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKI 103          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  167 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY--PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 436
            + ++ +  GKI+I +F ATWCGPCR+I+P F + SEKY   +++F  VDVD   + S    I+A PTF   KDGQ++D+LVGAN   L+  V
Sbjct:   10 EFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLV 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  167 KMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 442
            +   A  + K+V+ +F ATWCGPC+MIAP   + SE+YP   F  +DVDEL + +   ++ A PT    K+G++V K+VGAN   +++ +AA
Sbjct:   10 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAA 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   86 DEEDGEHPVEFAGGNVSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVA 439
            +EE  E P    G  V ++ +K+ ++  + EA +  ++V  +FSATWCGPCR I PFF  LS K+  ++FL VD D   E      I   PTF F K  ++VD+L GA K +L+  +A
Sbjct:  438 EEETMEFP---EGDKVKVILSKEDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIA 550          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  188 EGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAA 442
            + K+V+ +F ATWCGPC+ IAP F + S  Y    F+ VDVD+L E +    + A P+FF  K+G++++++VGAN  +L+  + A
Sbjct:   17 QDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKA 101          
BLAST of CF835267 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  194 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 454
            KI+I +F ATWCGPC+ IAP + EL+  +  ++F  VDVDE  +  + +D+K  PTF F K+G  ++ L G  + EL++KV   V +
Sbjct:   28 KIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVSA 114          
The following BLAST results are available for this feature:
BLAST of CF835267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
THIO_RABIT2.370e-1841.18Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_OPHHA2.370e-1843.82Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
TRXH2_ARATH3.095e-1838.30Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
THIO_CHICK3.095e-1844.71Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_ICTPU2.006e-1748.19Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO_COPCM3.422e-1746.74Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
TRX1_YEAST1.301e-1641.30Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
TXND2_HUMAN2.897e-1639.83Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TRX1_SCHPO4.942e-1641.18Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO1_CAEEL6.454e-1642.53Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835267 ID=CF835267; Name=CF835267; organism=Citrus sinensis; type=EST; length=689bp
GTTGTCTGGTCTTTTGTCTGTTAACTGTTAGCTTTCAGGCCTTCAAAGCT
TCAATATGGGAACGTGTTTGTCCAAGCGTCAACATGATGAGGAGGATGGT
GAACACCCTGTTGAGTTTGCTGGTGGGAATGTGAGTCTTGTTACTACCAA
AGATATATGGGACCAAAAGATGTCAGAAGCTAGTAAGGAAGGGAAGATAG
TGATTGCGAACTTCAGCGCAACATGGTGTGGTCCTTGTAGAATGATTGCA
CCATTCTTCAGCGAGCTATCTGAGAAATACCCTTCGTTAATGTTCCTTTT
GGTCGATGTTGATGAACTAGTTGAGTTCAGCACTTCATGGGATATCAAAG
CCACTCCAACTTTCTTCTTTCTTAAAGATGGGCAGCAAGTTGACAAGCTA
GTTGGAGCAAACAAGCCAGAGCTACAGAAGAAGGTAGCGGCGGCTGTAGA
CTCAGTTGTCCCAAGTCAAAAATGATGATTACAATGGTCGTCCAATCTGT
GTTAGCATTGCCACCAATCTGTGTATGTTTCTGTGCTAGTAGTTAGATAA
GATTGCTTGATTGCAAGATTTTTTTTTTTTTTTGGTTGTATATTTATGCA
TTACTTTCTGTAGAAATGGCTGCTTATGTGATTTGTGATTCAATCCAACC
CTGTTCATGAAACAATGAAATGGAAAAAAAAAAAAAAAA
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