CF835272

Overview
NameCF835272
Unique NameCF835272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9752 contig Csv1_Contig9752:102..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_BURA4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=metE PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.805e-65
Identity = 121/162 (74.69%), Postives = 137/162 (84.57%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P I++GD+SRPKAMTV W + AQS+T +PMKGMLTGPVTILNWSFVR+DQPR  +CYQ+ALAI+DEV DLEKAG+ VIQIDEAALREGLPLR+++   YL WAV +FRIT  GVQD TQIHTHMCYS FNDII SI DMDADVITIE SRSD +LL  F
Sbjct:  525 CVKPPILFGDISRPKAMTVEWITYAQSLTNKPMKGMLTGPVTILNWSFVRDDQPRSVSCYQLALAIRDEVLDLEKAGVRVIQIDEAALREGLPLRRAQWGEYLKWAVEAFRITANGVQDDTQIHTHMCYSEFNDIIASIADMDADVITIETSRSDMELLDAF 686          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_MARAV (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=metE PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 4.445e-64
Identity = 115/163 (70.55%), Postives = 139/163 (85.28%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFR 491
            CV P I++GD+ RP+AMTV W   AQS+T +P+KGMLTGPVTILNWSFVR+DQPR ++C Q+ALAI++EV+DLEKAG+N+IQIDEAALREGLPLR+S+ A YL+WA++SFRI   GV D+TQIHTHMCYS FNDII +I  MDADVITIE SRSD +LL  FR
Sbjct:  520 CVKPPILFGDIRRPQAMTVEWIRYAQSLTDKPVKGMLTGPVTILNWSFVRDDQPRKDSCLQLALAIREEVQDLEKAGVNIIQIDEAALREGLPLRQSDWATYLEWAINSFRIAANGVDDSTQIHTHMCYSEFNDIIEAIARMDADVITIETSRSDMELLDAFR 682          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_BURVG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metE PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.293e-63
Identity = 117/168 (69.64%), Postives = 140/168 (83.33%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKY 506
            CV P I++GD+SRP AMTV W + AQS+T++PMKGMLTGPVTILNWSFVR+DQPR  +CYQ+ALAI+DEV DLE+AG+ VIQIDEAALREGLPLR+++   YL WA+ +FRI   GV+D TQIHTHMCYS FNDII SI +MDADVITIE SRSD +LL  F +G +Y
Sbjct:  525 CVKPPILFGDISRPSAMTVEWIAYAQSLTSKPMKGMLTGPVTILNWSFVRDDQPRSVSCYQLALAIRDEVLDLERAGVRVIQIDEAALREGLPLRRAQWPAYLKWAIDAFRIAANGVRDDTQIHTHMCYSEFNDIIASIAEMDADVITIETSRSDMELLDAF-DGFRY 691          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_BURP8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=metE PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.206e-63
Identity = 119/162 (73.46%), Postives = 134/162 (82.72%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P I++GD+SRPKAMTV W   AQ+ TA+PMKGMLTGPVTILNWSFVR+DQPR  +C Q+ALAI++EV DLEKAG+ VIQIDEAALREGLPLR+S+   YL WAV SFRI   GVQD TQIHTHMCYS FNDII SI +MDADVITIE SRSD +LL  F
Sbjct:  525 CVKPPILFGDISRPKAMTVEWICYAQAQTAKPMKGMLTGPVTILNWSFVRDDQPRSVSCRQLALAIREEVLDLEKAGVRVIQIDEAALREGLPLRRSQWNEYLQWAVESFRIAANGVQDETQIHTHMCYSEFNDIIASIAEMDADVITIETSRSDMELLDAF 686          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_HAHCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Hahella chejuensis (strain KCTC 2396) GN=metE PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 4.914e-63
Identity = 119/168 (70.83%), Postives = 136/168 (80.95%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKY 506
            CV P II+GD+SRP+AMTV W   AQS+T RPMKGMLTGPVTILNWSFVR+DQPR  TCYQ+ALAI+ EV+DLE+AG+ +IQIDEAALREGLPLR+++   YL WAV SFRI   GV D TQIHTHMCYS FNDII +I  MDADVITIE SRSD +LL  F +  KY
Sbjct:  520 CVKPPIIFGDISRPQAMTVEWIKYAQSLTDRPMKGMLTGPVTILNWSFVRDDQPRALTCYQLALAIRAEVQDLERAGVRIIQIDEAALREGLPLRRAQWREYLQWAVSSFRIAANGVADETQIHTHMCYSEFNDIIEAIAGMDADVITIETSRSDMELLDAF-DNFKY 686          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_FLAJ1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=metE PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 8.383e-63
Identity = 118/162 (72.84%), Postives = 131/162 (80.86%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P +IYGDVSRP  MTV WS  AQS+T++ +KGMLTGPVTIL WSFVRNDQPR ETC QIALA++DEV DLEKAGI +IQIDE A+REGLPLRK E A YLDWAV +FRI+  GV D TQIH HMCYS FNDII +I DMDADVITIE SRS  +LL  F
Sbjct:  530 CVKPPVIYGDVSRPNPMTVKWSKYAQSLTSKWVKGMLTGPVTILQWSFVRNDQPRSETCTQIALAVRDEVVDLEKAGIKIIQIDEPAIREGLPLRKEEWAKYLDWAVKAFRISASGVNDDTQIHPHMCYSEFNDIIQNIADMDADVITIECSRSQMELLDAF 691          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_RUTMC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=metE PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.160e-62
Identity = 112/164 (68.29%), Postives = 135/164 (82.32%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P II+GD+ RPK MT+ W + AQS+T +PMKGM+TGPVT+LNWSFVR+DQPR  TC Q++LAI+DEV DLEK+ IN+IQIDEAALREGLPLRKS+   YLDWA+ ++R++  GV D TQIHTHMCYS FNDII +I  MDADVITIE SRSD +LL +F E
Sbjct:  521 CVKPPIIFGDIFRPKPMTLDWITYAQSLTNKPMKGMITGPVTMLNWSFVRDDQPRATTCLQLSLAIRDEVLDLEKSNINIIQIDEAALREGLPLRKSQWQTYLDWAIRAYRVSANGVSDETQIHTHMCYSEFNDIIEAIAQMDADVITIETSRSDMELLDIFDE 684          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_ALHEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 9.268e-62
Identity = 118/168 (70.24%), Postives = 133/168 (79.17%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKY 506
            CV P IIYGDVSRP+ MTV WS  AQS+T RPMKGMLTGPVT+L WSFVR+DQPR ETC QIALA++DEV DLE AGI  IQIDE ALREGLPL++ +   YLDWAV  FR+T    QD TQIHTHMCYS FNDI+ +I  +DADVITIE SRSD +LL VF EG +Y
Sbjct:  522 CVKPPIIYGDVSRPRPMTVRWSEYAQSLTGRPMKGMLTGPVTVLQWSFVRDDQPRSETCRQIALALRDEVADLEAAGIPAIQIDEPALREGLPLQQRQWPGYLDWAVDCFRLTASVAQDATQIHTHMCYSEFNDIMGAIATLDADVITIETSRSDMELLEVF-EGFEY 688          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_ALCBS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=metE PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.581e-61
Identity = 114/164 (69.51%), Postives = 132/164 (80.49%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P II+GDV RP+AMTV W+  AQS+T +P+KGMLTGPVTIL WSFVR+DQPR +TC QIALA++DEV+DLEKAGI VIQIDE ALREGLPLR+ E   YLDWAV  FR+    V D TQIHTHMCYS FNDII +I  +DADVITIE SRS+ +LL  FR+
Sbjct:  525 CVKPPIIFGDVQRPQAMTVEWARYAQSLTHKPVKGMLTGPVTILQWSFVRDDQPRADTCRQIALALRDEVQDLEKAGIKVIQIDEPALREGLPLRQEEWTQYLDWAVDCFRLATVSVDDDTQIHTHMCYSEFNDIIEAIAALDADVITIETSRSNMELLDAFRD 688          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_THIDA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metE PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.065e-61
Identity = 114/162 (70.37%), Postives = 130/162 (80.25%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P I++GDV RP+ MTV W+   QS+T +PMKGMLTGPVT+LNWSFVR+DQPR E+C Q+AL I+DEV DLEKAG+ VIQIDEAALREGLPLR+S+   YL WAV SFRI   GV D TQIHTHMCYS FNDII +I  MDADVITIE SRSD +LL  F
Sbjct:  527 CVKPPILFGDVRRPRPMTVEWTRYGQSLTEKPMKGMLTGPVTLLNWSFVRDDQPRAESCKQLALTIRDEVADLEKAGVRVIQIDEAALREGLPLRRSQWKTYLGWAVESFRIAANGVADETQIHTHMCYSEFNDIIEAIAAMDADVITIETSRSDMELLDAF 688          
The following BLAST results are available for this feature:
BLAST of CF835272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_BURA41.805e-6574.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MARAV4.445e-6470.555-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURVG1.293e-6369.645-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP82.206e-6373.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAHCH4.914e-6370.835-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_FLAJ18.383e-6372.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RUTMC4.160e-6268.295-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALHEH9.268e-6270.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALCBS1.581e-6169.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THIDA2.065e-6170.375-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835272 ID=CF835272; Name=CF835272; organism=Citrus sinensis; type=EST; length=513bp
GCTGTGTGAACCCATCCATCATCTATGGTGACGTGAGCCGTCCCAAGGCT
ATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCCAAT
GAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTGTCA
GAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCCATC
AAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCAAAT
TGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGCATG
CTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGTGGT
GTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTTCAA
CGACATTATCCACTCAATTATCGACATGGATGCTGATGTGATCACCATTG
AGAACTCTCGTTCTGATGAGAAGCTCCTGTCTGTCTTCCGTGAGGGAGTC
AAGTATGGTGCTG
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