CF835272

Overview
NameCF835272
Unique NameCF835272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9752 contig Csv1_Contig9752:102..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_PARL1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=metE PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.305e-59
Identity = 112/162 (69.14%), Postives = 128/162 (79.01%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P II+GDVSRP+ MTV WS  AQS+T RP+KGMLTGPVTIL WSFVR+DQPR ETC QIALAI+DEV DLE AG+ +IQIDE ALREGLPL +SE   YL WA   FR++ C  +D TQIHTHMCYS FNDII +I D+DADVI+IE SRS  +LL  F
Sbjct:  523 CVKPPIIFGDVSRPEPMTVEWSRYAQSLTDRPVKGMLTGPVTILQWSFVRDDQPRSETCRQIALAIRDEVYDLEAAGLGMIQIDEPALREGLPLHRSEWDTYLRWACECFRLSVCVARDETQIHTHMCYSEFNDIIEAIADLDADVISIETSRSRMELLDAF 684          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_CYTH3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=metE PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.253e-58
Identity = 110/162 (67.90%), Postives = 127/162 (78.40%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P IIYGD+ R + MTV W++LAQS+T + MKGMLTGPVTIL WSFVR+DQPR +TC QIA AI+DEV DLE AGI +IQIDE A+REGLPLR+     YL+WAV  FRI+  GV+D TQIHTHMCYS FNDII +I  MDADVITIE SRS  +LL  F
Sbjct:  533 CVKPPIIYGDIERTEPMTVAWTTLAQSLTKKYMKGMLTGPVTILQWSFVRDDQPRRDTCMQIAFAIRDEVVDLEAAGIKIIQIDEPAIREGLPLRRENWETYLNWAVECFRISASGVKDETQIHTHMCYSEFNDIIKNIAAMDADVITIETSRSQMELLDAF 694          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.636e-58
Identity = 109/164 (66.46%), Postives = 130/164 (79.27%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P +IYGDV RP+AMTV WS  AQS+T++PMKGMLTGPVT+L WSFVR+DQPR +T  QIALA++DEV DLE AGI  IQIDE A REGLPLR S+   YL+WA  +FR++  GV++ TQIHTHMCYS FNDI+ +I  MDADVITIE SRS+ +LL  F E
Sbjct:  520 CVKPPVIYGDVYRPEAMTVEWSKYAQSLTSKPMKGMLTGPVTMLQWSFVRDDQPREQTALQIALALRDEVCDLEAAGIAAIQIDEPAFREGLPLRASDVPTYLEWAARAFRVSASGVRNDTQIHTHMCYSEFNDILPAIASMDADVITIETSRSNMELLDAFAE 683          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_RALSO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia solanacearum GN=metE PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.137e-58
Identity = 109/164 (66.46%), Postives = 128/164 (78.05%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P +IYGDV RP+ MTV WS  AQS+TA+PMKGMLTGPVT+L WSFVR+DQPR +T  QIALA++DEV DLE AGI  IQIDE A REGLPLR  + A YL+WA   FR++  GV++ TQIHTHMCYS FNDI+ +I  MDADVITIE SRS+ +LL  F E
Sbjct:  517 CVKPPVIYGDVYRPEPMTVEWSRYAQSLTAKPMKGMLTGPVTMLQWSFVRDDQPREQTALQIALALRDEVRDLEAAGIAAIQIDEPAFREGLPLRAGDVAVYLEWAARVFRVSASGVRNDTQIHTHMCYSEFNDILPAIASMDADVITIETSRSNMELLDAFGE 680          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_DICDI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Dictyostelium discoideum GN=metE PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.791e-58
Identity = 110/169 (65.09%), Postives = 133/169 (78.70%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYG 509
            CV P IIYGDV+RP  MT+ +++ AQ++T +PMKGMLTGPVTIL WSFVR+DQPR ETC+QI LAI+DEV DLE  GI  IQIDE A+REGLPLR S+   YL WA+ SF +++ GV+D+TQIH+HMCYS+FNDI  SI  MD DV+TIENS+SD KLL  F    KYG
Sbjct:  583 CVKPPIIYGDVNRPVPMTLEYTTFAQTLTTKPMKGMLTGPVTILQWSFVRDDQPRSETCFQIGLAIRDEVTDLENKGIACIQIDEPAIREGLPLRLSDWNQYLKWAIDSFLLSSTGVKDSTQIHSHMCYSDFNDIFESIQRMDTDVLTIENSKSDLKLLKAFE---KYG 748          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_MESSB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=metE PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 8.119e-58
Identity = 108/163 (66.26%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFR 491
            CV P II+GDVSRP+ MTV W++ AQS+T +P+KGMLTGPVT+L WSFVR+D PR   C QIA A++DEV DLE AGI VIQIDE ALREGLPLR++E   YLDWAV  FR+ + GV+  TQIHTHMCY+ FNDII +I  MDADVI+IE SRS  +LL  FR
Sbjct:  532 CVRPPIIFGDVSRPQPMTVDWATYAQSLTDKPVKGMLTGPVTMLQWSFVRDDLPRETVCRQIAFALRDEVSDLEAAGIGVIQIDEPALREGLPLREAERPAYLDWAVECFRLASSGVKPETQIHTHMCYAEFNDIIDAIAAMDADVISIETSRSKMELLRAFR 694          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_HAES1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus somnus (strain 129Pt) GN=metE PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.385e-57
Identity = 108/162 (66.67%), Postives = 127/162 (78.40%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P +IYGDV RPKAMTV WS  AQS+T + MKGMLTGPVTIL WSFVRND PR   C QI +A+ DEV DLEKAGI VIQIDE A+REGLPL++++   YL WA  +FR+++ GV D TQIHTHMCYS FNDI+ +I  +DADVITIE SRSD +LL+ F
Sbjct:  518 CVKPPVIYGDVVRPKAMTVRWSKYAQSLTKKVMKGMLTGPVTILQWSFVRNDIPRSTVCKQIGVALSDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDTYLQWAGEAFRLSSMGVADDTQIHTHMCYSEFNDILPAIAALDADVITIETSRSDMELLTAF 679          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_NITEU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosomonas europaea GN=metE PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.809e-57
Identity = 107/162 (66.05%), Postives = 127/162 (78.40%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P I+YGDV RP+AMTV W   AQS T +P+KGMLTGPVT+L WSFVR+DQPR  T  Q+ALAI+DEV DLE AGI +IQIDE A REGLPLRK +   YLDWAV +FR+ + GV+D TQIHTHMCYS F+DI+ +I ++DADVITIE SRS  +LL  F
Sbjct:  518 CVKPPILYGDVYRPEAMTVEWIKYAQSQTGKPVKGMLTGPVTMLMWSFVRDDQPRSTTALQLALAIRDEVADLENAGIGMIQIDEPAFREGLPLRKQDWKSYLDWAVKAFRVASSGVKDETQIHTHMCYSEFHDILPAIAELDADVITIETSRSRMELLDAF 679          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_BRAJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bradyrhizobium japonicum GN=metE PE=3 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.809e-57
Identity = 110/163 (67.48%), Postives = 127/163 (77.91%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFR 491
            CV P I++GDV RPK +TV W   AQS+T++PMK MLTGPVTILNWSFVR+D PR E C Q+ALA++DEV DLE AG  +IQIDEAALREGLPLR+S+   YLDWA   FRI + GV D TQIHTHMCYS FNDII +I  MDADVI+IE SRS  +LL  FR
Sbjct:  538 CVRPPILFGDVVRPKPITVEWWRYAQSLTSKPMKAMLTGPVTILNWSFVRDDIPRSEVCRQLALAMRDEVRDLENAGAAMIQIDEAALREGLPLRRSDWKAYLDWAGDCFRICSSGVTDQTQIHTHMCYSEFNDIIGAIAAMDADVISIETSRSKMELLDAFR 700          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_NITOC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=metE PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.085e-57
Identity = 106/162 (65.43%), Postives = 127/162 (78.40%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P IIYGDV R + MTV W   AQS+T+R +KGMLTGPVT+L WSFVR+DQPR +TC Q+AL ++DEV DLE+A I +IQ+DE A REGLPLR+ E   YL WAV  FR+ + GV+D TQIHTHMCYS FNDIIH+I  +DADVITIE SRSD +LL+ F
Sbjct:  521 CVKPPIIYGDVVRRQPMTVAWLRYAQSLTSRRVKGMLTGPVTLLQWSFVRDDQPRADTCLQLALVLRDEVRDLEQADIKLIQVDEPAFREGLPLRRVEWESYLAWAVRCFRVASSGVEDGTQIHTHMCYSEFNDIIHAIAALDADVITIETSRSDGELLAAF 682          
The following BLAST results are available for this feature:
BLAST of CF835272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_PARL14.305e-5969.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CYTH31.253e-5867.905-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ1.636e-5866.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALSO2.137e-5866.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DICDI2.791e-5865.095-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESSB8.119e-5866.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAES11.385e-5766.675-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITEU1.809e-5766.055-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BRAJA1.809e-5767.485-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITOC3.085e-5765.435-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835272 ID=CF835272; Name=CF835272; organism=Citrus sinensis; type=EST; length=513bp
GCTGTGTGAACCCATCCATCATCTATGGTGACGTGAGCCGTCCCAAGGCT
ATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCCAAT
GAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTGTCA
GAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCCATC
AAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCAAAT
TGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGCATG
CTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGTGGT
GTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTTCAA
CGACATTATCCACTCAATTATCGACATGGATGCTGATGTGATCACCATTG
AGAACTCTCGTTCTGATGAGAAGCTCCTGTCTGTCTTCCGTGAGGGAGTC
AAGTATGGTGCTG
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