CF835272

Overview
NameCF835272
Unique NameCF835272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9752 contig Csv1_Contig9752:102..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_PSEU5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=metE PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 4.455e-56
Identity = 108/163 (66.26%), Postives = 122/163 (74.85%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFR 491
            CV P+IIYGD+SRP+ MTV W   AQ  T R MKGMLTGPVT+L WSF R D PR     Q+ALAI+DEV DLE AGI +IQIDEAA REGLPLR+ +   YLDWAV +FR+   GV+D TQIHTHMCYS FND+I SI  MDADVITIE SRS  +LL  FR
Sbjct:  528 CVKPAIIYGDLSRPRPMTVDWIRYAQQQTDRIMKGMLTGPVTMLMWSFAREDVPREVQARQLALAIRDEVCDLEAAGIRIIQIDEAAFREGLPLRREQWRHYLDWAVEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSQMELLEAFR 690          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_BURPP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metE PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 7.599e-56
Identity = 110/162 (67.90%), Postives = 124/162 (76.54%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P IIYGDV RP+ MTV  +  AQS+T R MKGMLTGPVT+L WSFVR+DQPR  T  Q+ALAI+DEV DLEKAGI +IQIDE A REGLPLR+ + A YL+WA   FRI+  GV D TQIHTHMCYS FNDI+ SI  MDADVITIE SRS  +LL  F
Sbjct:  516 CVKPPIIYGDVYRPEPMTVETTRYAQSLTQRLMKGMLTGPVTMLQWSFVRDDQPRSTTALQLALAIRDEVVDLEKAGIRIIQIDEPAFREGLPLRRGDWAAYLEWATRVFRISAAGVADQTQIHTHMCYSEFNDILPSIAAMDADVITIETSRSAMELLDGF 677          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_SHEON (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shewanella oneidensis GN=metE PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 9.925e-56
Identity = 106/164 (64.63%), Postives = 127/164 (77.44%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P +IYGDVSRPKAMTV W+  AQS+T +P+KGMLTGPVTIL+WSF R D  R     Q+ALAI+DEV DL+ AGI +IQIDE A REGLPL++SE   YLDWAV++F+++  GV D TQIHTHMCYS FND I +I  MDADVITIE SRS  +LL+ F +
Sbjct:  521 CVKPPLIYGDVSRPKAMTVDWAVFAQSLTDKPVKGMLTGPVTILHWSFAREDISRDTIATQLALAIRDEVVDLQHAGIGIIQIDEPAFREGLPLKQSEWQAYLDWAVNAFKLSAAGVVDETQIHTHMCYSEFNDTIAAIAAMDADVITIETSRSRMELLNAFED 684          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_PSESM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas syringae pv. tomato GN=metE PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.211e-55
Identity = 106/162 (65.43%), Postives = 125/162 (77.16%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P+II+GD+SRP+ MTV W   AQS+T + MKGMLTGPVT+L WSF R D  R     Q+ALAI+DEV DLE+AGI ++QIDEAA REGLPLRK++   YLDWAV +FR+   GV+D TQIHTHMCYS FND+I SI  MDADVITIE SRSD +LL  F
Sbjct:  530 CVKPAIIFGDLSRPQPMTVDWIRYAQSLTDKTMKGMLTGPVTMLMWSFSREDVSRQVQAQQLALAIRDEVLDLERAGIKIVQIDEAAFREGLPLRKAQWQQYLDWAVAAFRLCASGVRDETQIHTHMCYSEFNDVIKSIAAMDADVITIETSRSDMELLDAF 691          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_SERP5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Serratia proteamaculans (strain 568) GN=metE PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.771e-55
Identity = 105/164 (64.02%), Postives = 126/164 (76.83%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P +I GD+SRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEVEDLEKAGI +IQIDE ALREGLPLR+S+ A YL+WAV +F++     +D TQIHTHMCY  FNDI+ SI  +DADVITIE SRSD  LL  F+E
Sbjct:  519 CVKPPVIIGDISRPEAITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVTREVIAKQIALALRDEVEDLEKAGIGIIQIDEPALREGLPLRQSDWAAYLNWAVDAFKLNAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMDLLEAFKE 682          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_SALRD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=metE PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.771e-55
Identity = 107/162 (66.05%), Postives = 121/162 (74.69%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P II GDVSRP+ MT  W S A   T  P+KGMLTGPVT+L WSFVR+DQ R ETC QIALAI+DEV DLE  GI  IQIDE A REGLPLR+ +   YLDWAV  FR+ + GV+D TQIHTHMCYS FNDII +I DMDADVI++E SRS  +LL  F
Sbjct:  529 CVRPPIIAGDVSRPEPMTTRWLSYANDQTDTPVKGMLTGPVTMLQWSFVRDDQSRAETCRQIALAIRDEVLDLEDVGIQAIQIDEPAFREGLPLREHQWDDYLDWAVECFRLASSGVRDETQIHTHMCYSEFNDIIEAIADMDADVISVEASRSKMELLDSF 690          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_PSEAE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa GN=metE PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.771e-55
Identity = 104/164 (63.41%), Postives = 124/164 (75.61%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P++IYGD+SRP+AMTV W   AQS+T + MKGMLTGPVT+L WSF R D  R     Q+ALAI+DEV DLE AGI ++QIDEAA REGLPLR++    YL+WA  +FR+   GV+D TQIHTHMCYS FND+I SI  MDADVITIE SRSD +LL  F +
Sbjct:  525 CVKPAVIYGDLSRPRAMTVEWIRYAQSLTDKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALAIRDEVVDLEAAGIRIVQIDEAAFREGLPLRRNAWPHYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLEAFEQ 688          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_PSEAB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metE PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.771e-55
Identity = 104/164 (63.41%), Postives = 124/164 (75.61%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P++IYGD+SRP+AMTV W   AQS+T + MKGMLTGPVT+L WSF R D  R     Q+ALAI+DEV DLE AGI ++QIDEAA REGLPLR++    YL+WA  +FR+   GV+D TQIHTHMCYS FND+I SI  MDADVITIE SRSD +LL  F +
Sbjct:  525 CVKPAVIYGDLSRPRAMTVEWIRYAQSLTDKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALAIRDEVVDLEAAGIRIVQIDEAAFREGLPLRRNAWPHYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLEAFEQ 688          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_PSEA8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=metE PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.771e-55
Identity = 104/164 (63.41%), Postives = 124/164 (75.61%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P++IYGD+SRP+AMTV W   AQS+T + MKGMLTGPVT+L WSF R D  R     Q+ALAI+DEV DLE AGI ++QIDEAA REGLPLR++    YL+WA  +FR+   GV+D TQIHTHMCYS FND+I SI  MDADVITIE SRSD +LL  F +
Sbjct:  525 CVKPAVIYGDLSRPRAMTVEWIRYAQSLTDKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALAIRDEVVDLEAAGIRIVQIDEAAFREGLPLRRNAWPHYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLEAFEQ 688          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_PSEA7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=metE PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.771e-55
Identity = 102/162 (62.96%), Postives = 124/162 (76.54%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P++IYGD+SRP+ MTV W   AQS+T + MKGMLTGPVT+L WSF R D  R     Q+ALA++DEV DLE+AGI ++QIDEAA REGLPLR+++   YL+WA  +FR+   GV+D TQIHTHMCYS FND+I SI  MDADVITIE SRSD +LL  F
Sbjct:  523 CVKPAVIYGDLSRPRPMTVEWIRYAQSLTGKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALALRDEVSDLEQAGIRIVQIDEAAFREGLPLRRADWPHYLEWATEAFRLCASGVRDETQIHTHMCYSEFNDVIESIAAMDADVITIETSRSDMELLEAF 684          
The following BLAST results are available for this feature:
BLAST of CF835272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_PSEU54.455e-5666.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPP7.599e-5667.905-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHEON9.925e-5664.635-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSESM2.211e-5565.435-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SERP53.771e-5564.025-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALRD3.771e-5566.055-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEAE3.771e-5563.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEAB3.771e-5563.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA83.771e-5563.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA73.771e-5562.965-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835272 ID=CF835272; Name=CF835272; organism=Citrus sinensis; type=EST; length=513bp
GCTGTGTGAACCCATCCATCATCTATGGTGACGTGAGCCGTCCCAAGGCT
ATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCCAAT
GAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTGTCA
GAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCCATC
AAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCAAAT
TGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGCATG
CTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGTGGT
GTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTTCAA
CGACATTATCCACTCAATTATCGACATGGATGCTGATGTGATCACCATTG
AGAACTCTCGTTCTGATGAGAAGCTCCTGTCTGTCTTCCGTGAGGGAGTC
AAGTATGGTGCTG
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